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iACP: a sequence-based tool for identifying anticancer peptides
Cancer remains a major killer worldwide. Traditional methods of cancer treatment are expensive and have some deleterious side effects on normal cells. Fortunately, the discovery of anticancer peptides (ACPs) has paved a new way for cancer treatment. With the explosive growth of peptide sequences gen...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941358/ https://www.ncbi.nlm.nih.gov/pubmed/26942877 http://dx.doi.org/10.18632/oncotarget.7815 |
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author | Chen, Wei Ding, Hui Feng, Pengmian Lin, Hao Chou, Kuo-Chen |
author_facet | Chen, Wei Ding, Hui Feng, Pengmian Lin, Hao Chou, Kuo-Chen |
author_sort | Chen, Wei |
collection | PubMed |
description | Cancer remains a major killer worldwide. Traditional methods of cancer treatment are expensive and have some deleterious side effects on normal cells. Fortunately, the discovery of anticancer peptides (ACPs) has paved a new way for cancer treatment. With the explosive growth of peptide sequences generated in the post genomic age, it is highly desired to develop computational methods for rapidly and effectively identifying ACPs, so as to speed up their application in treating cancer. Here we report a sequence-based predictor called iACP developed by the approach of optimizing the g-gap dipeptide components. It was demonstrated by rigorous cross-validations that the new predictor remarkably outperformed the existing predictors for the same purpose in both overall accuracy and stability. For the convenience of most experimental scientists, a publicly accessible web-server for iACP has been established at http://lin.uestc.edu.cn/server/iACP, by which users can easily obtain their desired results. |
format | Online Article Text |
id | pubmed-4941358 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-49413582016-07-19 iACP: a sequence-based tool for identifying anticancer peptides Chen, Wei Ding, Hui Feng, Pengmian Lin, Hao Chou, Kuo-Chen Oncotarget Research Paper Cancer remains a major killer worldwide. Traditional methods of cancer treatment are expensive and have some deleterious side effects on normal cells. Fortunately, the discovery of anticancer peptides (ACPs) has paved a new way for cancer treatment. With the explosive growth of peptide sequences generated in the post genomic age, it is highly desired to develop computational methods for rapidly and effectively identifying ACPs, so as to speed up their application in treating cancer. Here we report a sequence-based predictor called iACP developed by the approach of optimizing the g-gap dipeptide components. It was demonstrated by rigorous cross-validations that the new predictor remarkably outperformed the existing predictors for the same purpose in both overall accuracy and stability. For the convenience of most experimental scientists, a publicly accessible web-server for iACP has been established at http://lin.uestc.edu.cn/server/iACP, by which users can easily obtain their desired results. Impact Journals LLC 2016-03-01 /pmc/articles/PMC4941358/ /pubmed/26942877 http://dx.doi.org/10.18632/oncotarget.7815 Text en Copyright: © 2016 Chen et al. http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Chen, Wei Ding, Hui Feng, Pengmian Lin, Hao Chou, Kuo-Chen iACP: a sequence-based tool for identifying anticancer peptides |
title | iACP: a sequence-based tool for identifying anticancer peptides |
title_full | iACP: a sequence-based tool for identifying anticancer peptides |
title_fullStr | iACP: a sequence-based tool for identifying anticancer peptides |
title_full_unstemmed | iACP: a sequence-based tool for identifying anticancer peptides |
title_short | iACP: a sequence-based tool for identifying anticancer peptides |
title_sort | iacp: a sequence-based tool for identifying anticancer peptides |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941358/ https://www.ncbi.nlm.nih.gov/pubmed/26942877 http://dx.doi.org/10.18632/oncotarget.7815 |
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