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iACP: a sequence-based tool for identifying anticancer peptides

Cancer remains a major killer worldwide. Traditional methods of cancer treatment are expensive and have some deleterious side effects on normal cells. Fortunately, the discovery of anticancer peptides (ACPs) has paved a new way for cancer treatment. With the explosive growth of peptide sequences gen...

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Detalles Bibliográficos
Autores principales: Chen, Wei, Ding, Hui, Feng, Pengmian, Lin, Hao, Chou, Kuo-Chen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941358/
https://www.ncbi.nlm.nih.gov/pubmed/26942877
http://dx.doi.org/10.18632/oncotarget.7815
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author Chen, Wei
Ding, Hui
Feng, Pengmian
Lin, Hao
Chou, Kuo-Chen
author_facet Chen, Wei
Ding, Hui
Feng, Pengmian
Lin, Hao
Chou, Kuo-Chen
author_sort Chen, Wei
collection PubMed
description Cancer remains a major killer worldwide. Traditional methods of cancer treatment are expensive and have some deleterious side effects on normal cells. Fortunately, the discovery of anticancer peptides (ACPs) has paved a new way for cancer treatment. With the explosive growth of peptide sequences generated in the post genomic age, it is highly desired to develop computational methods for rapidly and effectively identifying ACPs, so as to speed up their application in treating cancer. Here we report a sequence-based predictor called iACP developed by the approach of optimizing the g-gap dipeptide components. It was demonstrated by rigorous cross-validations that the new predictor remarkably outperformed the existing predictors for the same purpose in both overall accuracy and stability. For the convenience of most experimental scientists, a publicly accessible web-server for iACP has been established at http://lin.uestc.edu.cn/server/iACP, by which users can easily obtain their desired results.
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spelling pubmed-49413582016-07-19 iACP: a sequence-based tool for identifying anticancer peptides Chen, Wei Ding, Hui Feng, Pengmian Lin, Hao Chou, Kuo-Chen Oncotarget Research Paper Cancer remains a major killer worldwide. Traditional methods of cancer treatment are expensive and have some deleterious side effects on normal cells. Fortunately, the discovery of anticancer peptides (ACPs) has paved a new way for cancer treatment. With the explosive growth of peptide sequences generated in the post genomic age, it is highly desired to develop computational methods for rapidly and effectively identifying ACPs, so as to speed up their application in treating cancer. Here we report a sequence-based predictor called iACP developed by the approach of optimizing the g-gap dipeptide components. It was demonstrated by rigorous cross-validations that the new predictor remarkably outperformed the existing predictors for the same purpose in both overall accuracy and stability. For the convenience of most experimental scientists, a publicly accessible web-server for iACP has been established at http://lin.uestc.edu.cn/server/iACP, by which users can easily obtain their desired results. Impact Journals LLC 2016-03-01 /pmc/articles/PMC4941358/ /pubmed/26942877 http://dx.doi.org/10.18632/oncotarget.7815 Text en Copyright: © 2016 Chen et al. http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Chen, Wei
Ding, Hui
Feng, Pengmian
Lin, Hao
Chou, Kuo-Chen
iACP: a sequence-based tool for identifying anticancer peptides
title iACP: a sequence-based tool for identifying anticancer peptides
title_full iACP: a sequence-based tool for identifying anticancer peptides
title_fullStr iACP: a sequence-based tool for identifying anticancer peptides
title_full_unstemmed iACP: a sequence-based tool for identifying anticancer peptides
title_short iACP: a sequence-based tool for identifying anticancer peptides
title_sort iacp: a sequence-based tool for identifying anticancer peptides
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941358/
https://www.ncbi.nlm.nih.gov/pubmed/26942877
http://dx.doi.org/10.18632/oncotarget.7815
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