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A phylogenetic revision of Penicillium sect. Exilicaulis, including nine new species from fynbos in South Africa
A survey of the fynbos biome in South Africa resulted in the isolation of 61 Penicillium species from Protea repens infructescences, air, and soil samples. Fourteen of these belong to Penicillium sect. Exilicaulis and therefore we considered it an opportunity to re-evaluate the taxonomy of the secti...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Mycological Association
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941689/ https://www.ncbi.nlm.nih.gov/pubmed/27433442 http://dx.doi.org/10.5598/imafungus.2016.07.01.06 |
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author | Visagie, Cobus M. Seifert, Keith A. Houbraken, Jos Samson, Robert A. Jacobs, Karin |
author_facet | Visagie, Cobus M. Seifert, Keith A. Houbraken, Jos Samson, Robert A. Jacobs, Karin |
author_sort | Visagie, Cobus M. |
collection | PubMed |
description | A survey of the fynbos biome in South Africa resulted in the isolation of 61 Penicillium species from Protea repens infructescences, air, and soil samples. Fourteen of these belong to Penicillium sect. Exilicaulis and therefore we considered it an opportunity to re-evaluate the taxonomy of the section. Phylogenetic comparisons of the ITS, β-tubulin, calmodulin and RPB2 gene regions of the 76 section Exilicaulis species, revealed 52 distinct species, including nine new species from fynbos. Morphological comparisons confirmed the novelty for most of these, however, new species closely related to P. rubefaciens did not show significant or consistent morphological differences and we thus placed a bias on phylogenetic data applying the Genealogical Concordance Phylogenetic Species Recognition (GCPSR) concept. In this paper we describe the nine new species and update the accepted species list and resolve synonyms in the section. Importantly, we reveal that P. citreosulfuratum is the correct name for the clade previously considered to represent P. toxicarium fide Serra et al. (2008). The nine new species are: Penicillium atrolazulinum, P. consobrinum, P. cravenianum, P. hemitrachum, P. pagulum, P. repensicola, P. momoii, P. subturcoseum, and P. xanthomelinii spp. nov. |
format | Online Article Text |
id | pubmed-4941689 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | International Mycological Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-49416892016-07-18 A phylogenetic revision of Penicillium sect. Exilicaulis, including nine new species from fynbos in South Africa Visagie, Cobus M. Seifert, Keith A. Houbraken, Jos Samson, Robert A. Jacobs, Karin IMA Fungus Article A survey of the fynbos biome in South Africa resulted in the isolation of 61 Penicillium species from Protea repens infructescences, air, and soil samples. Fourteen of these belong to Penicillium sect. Exilicaulis and therefore we considered it an opportunity to re-evaluate the taxonomy of the section. Phylogenetic comparisons of the ITS, β-tubulin, calmodulin and RPB2 gene regions of the 76 section Exilicaulis species, revealed 52 distinct species, including nine new species from fynbos. Morphological comparisons confirmed the novelty for most of these, however, new species closely related to P. rubefaciens did not show significant or consistent morphological differences and we thus placed a bias on phylogenetic data applying the Genealogical Concordance Phylogenetic Species Recognition (GCPSR) concept. In this paper we describe the nine new species and update the accepted species list and resolve synonyms in the section. Importantly, we reveal that P. citreosulfuratum is the correct name for the clade previously considered to represent P. toxicarium fide Serra et al. (2008). The nine new species are: Penicillium atrolazulinum, P. consobrinum, P. cravenianum, P. hemitrachum, P. pagulum, P. repensicola, P. momoii, P. subturcoseum, and P. xanthomelinii spp. nov. International Mycological Association 2016-06-01 2016-06 /pmc/articles/PMC4941689/ /pubmed/27433442 http://dx.doi.org/10.5598/imafungus.2016.07.01.06 Text en © 2016 International Mycological Association http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights. |
spellingShingle | Article Visagie, Cobus M. Seifert, Keith A. Houbraken, Jos Samson, Robert A. Jacobs, Karin A phylogenetic revision of Penicillium sect. Exilicaulis, including nine new species from fynbos in South Africa |
title | A phylogenetic revision of Penicillium sect. Exilicaulis, including nine new species from fynbos in South Africa |
title_full | A phylogenetic revision of Penicillium sect. Exilicaulis, including nine new species from fynbos in South Africa |
title_fullStr | A phylogenetic revision of Penicillium sect. Exilicaulis, including nine new species from fynbos in South Africa |
title_full_unstemmed | A phylogenetic revision of Penicillium sect. Exilicaulis, including nine new species from fynbos in South Africa |
title_short | A phylogenetic revision of Penicillium sect. Exilicaulis, including nine new species from fynbos in South Africa |
title_sort | phylogenetic revision of penicillium sect. exilicaulis, including nine new species from fynbos in south africa |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941689/ https://www.ncbi.nlm.nih.gov/pubmed/27433442 http://dx.doi.org/10.5598/imafungus.2016.07.01.06 |
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