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Reversible thermal unfolding of a yfdX protein with chaperone-like activity

yfdX proteins are ubiquitously present in a large number of virulent bacteria. A member of this family of protein in E. coli is known to be up-regulated by the multidrug response regulator. Their abundance in such bacteria suggests some important yet unidentified functional role of this protein. Her...

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Autores principales: Saha, Paramita, Manna, Camelia, Chakrabarti, Jaydeb, Ghosh, Mahua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941729/
https://www.ncbi.nlm.nih.gov/pubmed/27404435
http://dx.doi.org/10.1038/srep29541
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author Saha, Paramita
Manna, Camelia
Chakrabarti, Jaydeb
Ghosh, Mahua
author_facet Saha, Paramita
Manna, Camelia
Chakrabarti, Jaydeb
Ghosh, Mahua
author_sort Saha, Paramita
collection PubMed
description yfdX proteins are ubiquitously present in a large number of virulent bacteria. A member of this family of protein in E. coli is known to be up-regulated by the multidrug response regulator. Their abundance in such bacteria suggests some important yet unidentified functional role of this protein. Here, we study the thermal response and stability of yfdX protein STY3178 from Salmonella Typhi using circular dichroism, steady state fluorescence, dynamic light scattering and nuclear magnetic resonance experiments. We observe the protein to be stable up to a temperature of 45 °C. It folds back to the native conformation from unfolded state at temperature as high as 80 °C. The kinetic measurements of unfolding and refolding show Arrhenius behavior where the refolding involves less activation energy barrier than that of unfolding. We propose a homology model to understand the stability of the protein. Our molecular dynamic simulation studies on this model structure at high temperature show that the structure of this protein is quite stable. Finally, we report a possible functional role of this protein as a chaperone, capable of preventing DTT induced aggregation of insulin. Our studies will have broader implication in understanding the role of yfdX proteins in bacterial function and virulence.
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spelling pubmed-49417292016-07-20 Reversible thermal unfolding of a yfdX protein with chaperone-like activity Saha, Paramita Manna, Camelia Chakrabarti, Jaydeb Ghosh, Mahua Sci Rep Article yfdX proteins are ubiquitously present in a large number of virulent bacteria. A member of this family of protein in E. coli is known to be up-regulated by the multidrug response regulator. Their abundance in such bacteria suggests some important yet unidentified functional role of this protein. Here, we study the thermal response and stability of yfdX protein STY3178 from Salmonella Typhi using circular dichroism, steady state fluorescence, dynamic light scattering and nuclear magnetic resonance experiments. We observe the protein to be stable up to a temperature of 45 °C. It folds back to the native conformation from unfolded state at temperature as high as 80 °C. The kinetic measurements of unfolding and refolding show Arrhenius behavior where the refolding involves less activation energy barrier than that of unfolding. We propose a homology model to understand the stability of the protein. Our molecular dynamic simulation studies on this model structure at high temperature show that the structure of this protein is quite stable. Finally, we report a possible functional role of this protein as a chaperone, capable of preventing DTT induced aggregation of insulin. Our studies will have broader implication in understanding the role of yfdX proteins in bacterial function and virulence. Nature Publishing Group 2016-07-11 /pmc/articles/PMC4941729/ /pubmed/27404435 http://dx.doi.org/10.1038/srep29541 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Saha, Paramita
Manna, Camelia
Chakrabarti, Jaydeb
Ghosh, Mahua
Reversible thermal unfolding of a yfdX protein with chaperone-like activity
title Reversible thermal unfolding of a yfdX protein with chaperone-like activity
title_full Reversible thermal unfolding of a yfdX protein with chaperone-like activity
title_fullStr Reversible thermal unfolding of a yfdX protein with chaperone-like activity
title_full_unstemmed Reversible thermal unfolding of a yfdX protein with chaperone-like activity
title_short Reversible thermal unfolding of a yfdX protein with chaperone-like activity
title_sort reversible thermal unfolding of a yfdx protein with chaperone-like activity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941729/
https://www.ncbi.nlm.nih.gov/pubmed/27404435
http://dx.doi.org/10.1038/srep29541
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