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Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils

Microbes are widely distributed in soils and play a very important role in nutrient cycling and ecosystem services. To understand the biogeographic distribution of forest soil bacteria, we collected 115 soil samples in typical forest ecosystems across eastern China to investigate their bacterial com...

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Autores principales: Xia, Zongwei, Bai, Edith, Wang, Qingkui, Gao, Decai, Zhou, Jidong, Jiang, Ping, Wu, Jiabing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4942481/
https://www.ncbi.nlm.nih.gov/pubmed/27468285
http://dx.doi.org/10.3389/fmicb.2016.01106
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author Xia, Zongwei
Bai, Edith
Wang, Qingkui
Gao, Decai
Zhou, Jidong
Jiang, Ping
Wu, Jiabing
author_facet Xia, Zongwei
Bai, Edith
Wang, Qingkui
Gao, Decai
Zhou, Jidong
Jiang, Ping
Wu, Jiabing
author_sort Xia, Zongwei
collection PubMed
description Microbes are widely distributed in soils and play a very important role in nutrient cycling and ecosystem services. To understand the biogeographic distribution of forest soil bacteria, we collected 115 soil samples in typical forest ecosystems across eastern China to investigate their bacterial community compositions using Illumina MiSeq high throughput sequencing based on 16S rRNA. We obtained 4,667,656 sequences totally and more than 70% of these sequences were classified into five dominant groups, i.e., Actinobacteria, Acidobacteria, Alphaproteobacteria, Verrucomicrobia, and Planctomycetes (relative abundance >5%). The bacterial diversity showed a parabola shape along latitude and the maximum diversity appeared at latitudes between 33.50°N and 40°N, an area characterized by warm-temperate zones and moderate temperature, neutral soil pH and high substrate availability (soil C and N) from dominant deciduous broad-leaved forests. Pairwise dissimilarity matrix in bacterial community composition showed that bacterial community structure had regional similarity and the latitude of 30°N could be used as the dividing line between southern and northern forest soils. Soil properties and climate conditions (MAT and MAP) greatly accounted for the differences in the soil bacterial structure. Among all soil parameters determined, soil pH predominantly affected the diversity and composition of the bacterial community, and soil pH = 5 probably could be used as a threshold below which soil bacterial diversity might decline and soil bacterial community structure might change significantly. Moreover, soil exchangeable cations, especially Ca(2+) (ECa(2+)) and some other soil variables were also closely related to bacterial community structure. The selected environmental variables (21.11%) explained more of the bacterial community variation than geographic distance (15.88%), indicating that the edaphic properties and environmental factors played a more important role than geographic dispersal limitation in determining the bacterial community structure in Chinese forest soils.
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spelling pubmed-49424812016-07-27 Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils Xia, Zongwei Bai, Edith Wang, Qingkui Gao, Decai Zhou, Jidong Jiang, Ping Wu, Jiabing Front Microbiol Microbiology Microbes are widely distributed in soils and play a very important role in nutrient cycling and ecosystem services. To understand the biogeographic distribution of forest soil bacteria, we collected 115 soil samples in typical forest ecosystems across eastern China to investigate their bacterial community compositions using Illumina MiSeq high throughput sequencing based on 16S rRNA. We obtained 4,667,656 sequences totally and more than 70% of these sequences were classified into five dominant groups, i.e., Actinobacteria, Acidobacteria, Alphaproteobacteria, Verrucomicrobia, and Planctomycetes (relative abundance >5%). The bacterial diversity showed a parabola shape along latitude and the maximum diversity appeared at latitudes between 33.50°N and 40°N, an area characterized by warm-temperate zones and moderate temperature, neutral soil pH and high substrate availability (soil C and N) from dominant deciduous broad-leaved forests. Pairwise dissimilarity matrix in bacterial community composition showed that bacterial community structure had regional similarity and the latitude of 30°N could be used as the dividing line between southern and northern forest soils. Soil properties and climate conditions (MAT and MAP) greatly accounted for the differences in the soil bacterial structure. Among all soil parameters determined, soil pH predominantly affected the diversity and composition of the bacterial community, and soil pH = 5 probably could be used as a threshold below which soil bacterial diversity might decline and soil bacterial community structure might change significantly. Moreover, soil exchangeable cations, especially Ca(2+) (ECa(2+)) and some other soil variables were also closely related to bacterial community structure. The selected environmental variables (21.11%) explained more of the bacterial community variation than geographic distance (15.88%), indicating that the edaphic properties and environmental factors played a more important role than geographic dispersal limitation in determining the bacterial community structure in Chinese forest soils. Frontiers Media S.A. 2016-07-13 /pmc/articles/PMC4942481/ /pubmed/27468285 http://dx.doi.org/10.3389/fmicb.2016.01106 Text en Copyright © 2016 Xia, Bai, Wang, Gao, Zhou, Jiang and Wu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Xia, Zongwei
Bai, Edith
Wang, Qingkui
Gao, Decai
Zhou, Jidong
Jiang, Ping
Wu, Jiabing
Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils
title Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils
title_full Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils
title_fullStr Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils
title_full_unstemmed Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils
title_short Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils
title_sort biogeographic distribution patterns of bacteria in typical chinese forest soils
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4942481/
https://www.ncbi.nlm.nih.gov/pubmed/27468285
http://dx.doi.org/10.3389/fmicb.2016.01106
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