Cargando…
Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci
In this study, a new STRtyper-27 system, including the same Yfiler Plus loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385a/b, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, Y-GATA H4, DYS449, DYS460, DYS481, DYS518, DYS533, DYS570, DYS576, DYS627 and DYF387S1a/b), was e...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4942765/ https://www.ncbi.nlm.nih.gov/pubmed/27406339 http://dx.doi.org/10.1038/srep29557 |
_version_ | 1782442475773755392 |
---|---|
author | Bai, Rufeng Liu, Yaju Li, Zheng Jin, Haiying Tian, Qinghua Shi, Meisen Ma, Shuhua |
author_facet | Bai, Rufeng Liu, Yaju Li, Zheng Jin, Haiying Tian, Qinghua Shi, Meisen Ma, Shuhua |
author_sort | Bai, Rufeng |
collection | PubMed |
description | In this study, a new STRtyper-27 system, including the same Yfiler Plus loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385a/b, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, Y-GATA H4, DYS449, DYS460, DYS481, DYS518, DYS533, DYS570, DYS576, DYS627 and DYF387S1a/b), was established using a set of 5 fluorescent dye labels. Primers, internal size standard, allelic ladders and matrix standard set were designed and created in-house for this multiplex system. This paper describes the validation studies conducted with the STRtyper-27Y system using a 3130XL genetic analyzer for fragment length detection that included the analysis of the following parameters and aspects: sensitivity, species specificity, inhibition, haplotype concordance, precision, stutter, DNA mixtures, and stability studies with crime scene samples. The studies demonstrated, that the STRtyper-27Y system provided equivalent overall performance comparable to the latest Yfiler Plus kit, but with enhanced compatibility in terms of instrument platforms and software allowing forensic laboratories to conduct its forensic application and evaluate its performance, all in their own 5 dye Y-STR chemistry system /environment without software or instrument upgrades. |
format | Online Article Text |
id | pubmed-4942765 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-49427652016-07-20 Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci Bai, Rufeng Liu, Yaju Li, Zheng Jin, Haiying Tian, Qinghua Shi, Meisen Ma, Shuhua Sci Rep Article In this study, a new STRtyper-27 system, including the same Yfiler Plus loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385a/b, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, Y-GATA H4, DYS449, DYS460, DYS481, DYS518, DYS533, DYS570, DYS576, DYS627 and DYF387S1a/b), was established using a set of 5 fluorescent dye labels. Primers, internal size standard, allelic ladders and matrix standard set were designed and created in-house for this multiplex system. This paper describes the validation studies conducted with the STRtyper-27Y system using a 3130XL genetic analyzer for fragment length detection that included the analysis of the following parameters and aspects: sensitivity, species specificity, inhibition, haplotype concordance, precision, stutter, DNA mixtures, and stability studies with crime scene samples. The studies demonstrated, that the STRtyper-27Y system provided equivalent overall performance comparable to the latest Yfiler Plus kit, but with enhanced compatibility in terms of instrument platforms and software allowing forensic laboratories to conduct its forensic application and evaluate its performance, all in their own 5 dye Y-STR chemistry system /environment without software or instrument upgrades. Nature Publishing Group 2016-07-13 /pmc/articles/PMC4942765/ /pubmed/27406339 http://dx.doi.org/10.1038/srep29557 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Bai, Rufeng Liu, Yaju Li, Zheng Jin, Haiying Tian, Qinghua Shi, Meisen Ma, Shuhua Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci |
title | Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci |
title_full | Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci |
title_fullStr | Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci |
title_full_unstemmed | Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci |
title_short | Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci |
title_sort | developmental validation of a novel 5 dye y-str system comprising the 27 yfilerplus loci |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4942765/ https://www.ncbi.nlm.nih.gov/pubmed/27406339 http://dx.doi.org/10.1038/srep29557 |
work_keys_str_mv | AT bairufeng developmentalvalidationofanovel5dyeystrsystemcomprisingthe27yfilerplusloci AT liuyaju developmentalvalidationofanovel5dyeystrsystemcomprisingthe27yfilerplusloci AT lizheng developmentalvalidationofanovel5dyeystrsystemcomprisingthe27yfilerplusloci AT jinhaiying developmentalvalidationofanovel5dyeystrsystemcomprisingthe27yfilerplusloci AT tianqinghua developmentalvalidationofanovel5dyeystrsystemcomprisingthe27yfilerplusloci AT shimeisen developmentalvalidationofanovel5dyeystrsystemcomprisingthe27yfilerplusloci AT mashuhua developmentalvalidationofanovel5dyeystrsystemcomprisingthe27yfilerplusloci |