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Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci

In this study, a new STRtyper-27 system, including the same Yfiler Plus loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385a/b, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, Y-GATA H4, DYS449, DYS460, DYS481, DYS518, DYS533, DYS570, DYS576, DYS627 and DYF387S1a/b), was e...

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Autores principales: Bai, Rufeng, Liu, Yaju, Li, Zheng, Jin, Haiying, Tian, Qinghua, Shi, Meisen, Ma, Shuhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4942765/
https://www.ncbi.nlm.nih.gov/pubmed/27406339
http://dx.doi.org/10.1038/srep29557
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author Bai, Rufeng
Liu, Yaju
Li, Zheng
Jin, Haiying
Tian, Qinghua
Shi, Meisen
Ma, Shuhua
author_facet Bai, Rufeng
Liu, Yaju
Li, Zheng
Jin, Haiying
Tian, Qinghua
Shi, Meisen
Ma, Shuhua
author_sort Bai, Rufeng
collection PubMed
description In this study, a new STRtyper-27 system, including the same Yfiler Plus loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385a/b, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, Y-GATA H4, DYS449, DYS460, DYS481, DYS518, DYS533, DYS570, DYS576, DYS627 and DYF387S1a/b), was established using a set of 5 fluorescent dye labels. Primers, internal size standard, allelic ladders and matrix standard set were designed and created in-house for this multiplex system. This paper describes the validation studies conducted with the STRtyper-27Y system using a 3130XL genetic analyzer for fragment length detection that included the analysis of the following parameters and aspects: sensitivity, species specificity, inhibition, haplotype concordance, precision, stutter, DNA mixtures, and stability studies with crime scene samples. The studies demonstrated, that the STRtyper-27Y system provided equivalent overall performance comparable to the latest Yfiler Plus kit, but with enhanced compatibility in terms of instrument platforms and software allowing forensic laboratories to conduct its forensic application and evaluate its performance, all in their own 5 dye Y-STR chemistry system /environment without software or instrument upgrades.
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spelling pubmed-49427652016-07-20 Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci Bai, Rufeng Liu, Yaju Li, Zheng Jin, Haiying Tian, Qinghua Shi, Meisen Ma, Shuhua Sci Rep Article In this study, a new STRtyper-27 system, including the same Yfiler Plus loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385a/b, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, Y-GATA H4, DYS449, DYS460, DYS481, DYS518, DYS533, DYS570, DYS576, DYS627 and DYF387S1a/b), was established using a set of 5 fluorescent dye labels. Primers, internal size standard, allelic ladders and matrix standard set were designed and created in-house for this multiplex system. This paper describes the validation studies conducted with the STRtyper-27Y system using a 3130XL genetic analyzer for fragment length detection that included the analysis of the following parameters and aspects: sensitivity, species specificity, inhibition, haplotype concordance, precision, stutter, DNA mixtures, and stability studies with crime scene samples. The studies demonstrated, that the STRtyper-27Y system provided equivalent overall performance comparable to the latest Yfiler Plus kit, but with enhanced compatibility in terms of instrument platforms and software allowing forensic laboratories to conduct its forensic application and evaluate its performance, all in their own 5 dye Y-STR chemistry system /environment without software or instrument upgrades. Nature Publishing Group 2016-07-13 /pmc/articles/PMC4942765/ /pubmed/27406339 http://dx.doi.org/10.1038/srep29557 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Bai, Rufeng
Liu, Yaju
Li, Zheng
Jin, Haiying
Tian, Qinghua
Shi, Meisen
Ma, Shuhua
Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci
title Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci
title_full Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci
title_fullStr Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci
title_full_unstemmed Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci
title_short Developmental Validation of a novel 5 dye Y-STR System comprising the 27 YfilerPlus loci
title_sort developmental validation of a novel 5 dye y-str system comprising the 27 yfilerplus loci
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4942765/
https://www.ncbi.nlm.nih.gov/pubmed/27406339
http://dx.doi.org/10.1038/srep29557
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