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Transitions in a genetic transcriptional regulatory system under Lévy motion

Based on a stochastic differential equation model for a single genetic regulatory system, we examine the dynamical effects of noisy fluctuations, arising in the synthesis reaction, on the evolution of the transcription factor activator in terms of its concentration. The fluctuations are modeled by B...

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Autores principales: Zheng, Yayun, Serdukova, Larissa, Duan, Jinqiao, Kurths, Jürgen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944134/
https://www.ncbi.nlm.nih.gov/pubmed/27411445
http://dx.doi.org/10.1038/srep29274
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author Zheng, Yayun
Serdukova, Larissa
Duan, Jinqiao
Kurths, Jürgen
author_facet Zheng, Yayun
Serdukova, Larissa
Duan, Jinqiao
Kurths, Jürgen
author_sort Zheng, Yayun
collection PubMed
description Based on a stochastic differential equation model for a single genetic regulatory system, we examine the dynamical effects of noisy fluctuations, arising in the synthesis reaction, on the evolution of the transcription factor activator in terms of its concentration. The fluctuations are modeled by Brownian motion and α-stable Lévy motion. Two deterministic quantities, the mean first exit time (MFET) and the first escape probability (FEP), are used to analyse the transitions from the low to high concentration states. A shorter MFET or higher FEP in the low concentration region facilitates such a transition. We have observed that higher noise intensities and larger jumps of the Lévy motion shortens the MFET and thus benefits transitions. The Lévy motion activates a transition from the low concentration region to the non-adjacent high concentration region, while Brownian motion can not induce this phenomenon. There are optimal proportions of Gaussian and non-Gaussian noises, which maximise the quantities MFET and FEP for each concentration, when the total sum of noise intensities are kept constant. Because a weaker stability indicates a higher transition probability, a new geometric concept is introduced to quantify the basin stability of the low concentration region, characterised by the escaping behaviour.
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spelling pubmed-49441342016-07-20 Transitions in a genetic transcriptional regulatory system under Lévy motion Zheng, Yayun Serdukova, Larissa Duan, Jinqiao Kurths, Jürgen Sci Rep Article Based on a stochastic differential equation model for a single genetic regulatory system, we examine the dynamical effects of noisy fluctuations, arising in the synthesis reaction, on the evolution of the transcription factor activator in terms of its concentration. The fluctuations are modeled by Brownian motion and α-stable Lévy motion. Two deterministic quantities, the mean first exit time (MFET) and the first escape probability (FEP), are used to analyse the transitions from the low to high concentration states. A shorter MFET or higher FEP in the low concentration region facilitates such a transition. We have observed that higher noise intensities and larger jumps of the Lévy motion shortens the MFET and thus benefits transitions. The Lévy motion activates a transition from the low concentration region to the non-adjacent high concentration region, while Brownian motion can not induce this phenomenon. There are optimal proportions of Gaussian and non-Gaussian noises, which maximise the quantities MFET and FEP for each concentration, when the total sum of noise intensities are kept constant. Because a weaker stability indicates a higher transition probability, a new geometric concept is introduced to quantify the basin stability of the low concentration region, characterised by the escaping behaviour. Nature Publishing Group 2016-07-14 /pmc/articles/PMC4944134/ /pubmed/27411445 http://dx.doi.org/10.1038/srep29274 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Zheng, Yayun
Serdukova, Larissa
Duan, Jinqiao
Kurths, Jürgen
Transitions in a genetic transcriptional regulatory system under Lévy motion
title Transitions in a genetic transcriptional regulatory system under Lévy motion
title_full Transitions in a genetic transcriptional regulatory system under Lévy motion
title_fullStr Transitions in a genetic transcriptional regulatory system under Lévy motion
title_full_unstemmed Transitions in a genetic transcriptional regulatory system under Lévy motion
title_short Transitions in a genetic transcriptional regulatory system under Lévy motion
title_sort transitions in a genetic transcriptional regulatory system under lévy motion
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944134/
https://www.ncbi.nlm.nih.gov/pubmed/27411445
http://dx.doi.org/10.1038/srep29274
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