Cargando…

Microsatellite Length Scoring by Single Molecule Real Time Sequencing – Effects of Sequence Structure and PCR Regime

Microsatellites are DNA sequences consisting of repeated, short (1–6 bp) sequence motifs that are highly mutable by enzymatic slippage during replication. Due to their high intrinsic variability, microsatellites have important applications in population genetics, forensics, genome mapping, as well a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liljegren, Mikkel Meyn, de Muinck, Eric Jacques, Trosvik, Pål
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4945053/ https://www.ncbi.nlm.nih.gov/pubmed/27414800 http://dx.doi.org/10.1371/journal.pone.0159232

Ejemplares similares

Ecology of bacteria in the human gastrointestinal tract—identification of keystone and foundation taxa
por: Trosvik, Pål, et al.
Publicado: (2015)

Individuality and convergence of the infant gut microbiota during the first year of life
por: de Muinck, Eric J., et al.
Publicado: (2018)

A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform
por: de Muinck, Eric J., et al.
Publicado: (2017)

Linking Spatial Structure and Community-Level Biotic Interactions through Cooccurrence and Time Series Modeling of the Human Intestinal Microbiota
por: de Muinck, Eric J., et al.
Publicado: (2017)

Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys
por: Trosvik, Pål, et al.
Publicado: (2018)

Single-molecule real-time sequencing of the full-length transcriptome of Halophila beccarii
por: Chen, Siting, et al.
Publicado: (2022)

Microsatellite instability in prostate cancer by PCR or next-generation sequencing
por: Hempelmann, Jennifer A., et al.
Publicado: (2018)

Massively parallel single-molecule telomere length measurement with digital real-time PCR
por: Luo, Yongqiang, et al.
Publicado: (2020)

Evaluation of the effects of sequence length and microsatellite instability on single-guide RNA activity and specificity
por: Zhao, Changzhi, et al.
Publicado: (2019)

Full-length SMRT transcriptome sequencing and microsatellite characterization in Paulownia catalpifolia
por: Feng, Yanzhi, et al.
Publicado: (2021)

Examining Sources of Error in PCR by Single-Molecule Sequencing
por: Potapov, Vladimir, et al.
Publicado: (2017)

Context-Dependent Competition in a Model Gut Bacterial Community
por: de Muinck, Eric J., et al.
Publicado: (2013)

Single-molecule real-time sequencing of the full-length transcriptome of loquat under low-temperature stress
por: Pan, Cuiping, et al.
Publicado: (2020)

Bisulfite treatment and single-molecule real-time sequencing reveal D-loop length, position, and distribution
por: Shah, Shanaya Shital, et al.
Publicado: (2020)

Changes in the fecal microbiota in dogs with acute hemorrhagic diarrhea during an outbreak in Norway
por: Herstad, Kristin M. V., et al.
Publicado: (2021)

Correction: Examining Sources of Error in PCR by Single-Molecule Sequencing
por: Potapov, Vladimir, et al.
Publicado: (2017)

Full-length transcriptome analysis of the bloom-forming dinoflagellate Akashiwo sanguinea by single-molecule real-time sequencing
por: Chen, Tiantian, et al.
Publicado: (2022)

Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche
por: de Muinck, Eric J, et al.
Publicado: (2013)

Single molecule, near full-length genome sequencing of dengue virus
por: Adikari, Thiruni N., et al.
Publicado: (2020)

Construction of full-length Japanese reference panel of class I HLA genes with single-molecule, real-time sequencing
por: Mimori, Takahiro, et al.
Publicado: (2018)

Single-Molecule Real-Time Sequencing of Full-Length Transcriptome and Identification of Genes Related to Male Development in Cannabis sativa
por: Jiang, Hui, et al.
Publicado: (2022)

Microsatellites in palm (Arecaceae) sequences
por: Palliyarakkal, Manju Kalathil, et al.
Publicado: (2011)

Full-length transcriptome sequencing analysis and characterization, development and validation of microsatellite markers in Kengyilia melanthera
por: Xiong, Yanli, et al.
Publicado: (2022)

Thermoelectric effect and its dependence on molecular length and sequence in single DNA molecules
por: Li, Yueqi, et al.
Publicado: (2016)

Full-Length Transcriptome Analysis of the Ichthyotoxic Harmful Alga Heterosigma akashiwo (Raphidophyceae) Using Single-Molecule Real-Time Sequencing
por: Ji, Nanjing, et al.
Publicado: (2023)

Single-Molecule LATE-PCR Analysis of Human Mitochondrial Genomic Sequence Variations
por: Osborne, Adam, et al.
Publicado: (2009)

Direct detection of DNA methylation during single-molecule, real-time sequencing
por: Flusberg, Benjamin A., et al.
Publicado: (2010)

Improved Nanopore full-length cDNA sequencing by PCR-suppression
por: Bayega, Anthony, et al.
Publicado: (2022)

Complete Genome Sequence of Paenibacillus sp. Strain IHBB 10380 Using PacBio Single-Molecule Real-Time Sequencing Technology
por: Pal, Mohinder, et al.
Publicado: (2015)

Comparison of MultiLocus Sequence Typing (MLST) and Microsatellite Length Polymorphism (MLP) for Pneumocystis jirovecii genotyping
por: Gits-Muselli, Maud, et al.
Publicado: (2020)

Single-molecule long-read sequencing of the full-length transcriptome of Rhododendron lapponicum L.
por: Jia, Xinping, et al.
Publicado: (2020)

Full-Length Transcriptome Analysis of Plasmodium falciparum by Single-Molecule Long-Read Sequencing
por: Yang, Mengquan, et al.
Publicado: (2021)

A method for multiplexed full-length single-molecule sequencing of the human mitochondrial genome
por: Keraite, Ieva, et al.
Publicado: (2022)

Sequence determinants of human microsatellite variability
por: Pemberton, Trevor J, et al.
Publicado: (2009)

Single molecule quantitation and sequencing of rare translocations using microfluidic nested digital PCR
por: Shuga, Joe, et al.
Publicado: (2013)

Whole Genome Sequencing of Hepatitis A Virus Using a PCR-Free Single-Molecule Nanopore Sequencing Approach
por: Batista, Frederico M., et al.
Publicado: (2020)

Single-Molecule Real-Time Sequencing to Explore the Mycobiome Diversity in Malt
por: Long, Nan, et al.
Publicado: (2022)

Whole‐genome sequencing of SARS‐CoV‐2: Comparison of target capture and amplicon single molecule real‐time sequencing protocols
por: Nicot, Florence, et al.
Publicado: (2022)

PCR Amplification and Sequencing Analysis of Full-Length Turkey Coronavirus Spike Gene
por: Chen, Yi-Ning, et al.
Publicado: (2015)

Advances in genotyping microsatellite markers through sequencing and consequences of scoring methods for Ceratonia siliqua (Leguminosae)
por: Viruel, Juan, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_6adomkt6t0j7fu4g20rjjuaae3