Cargando…

PIMADb: A Database of Protein–Protein Interactions in Huge Macromolecular Assemblies

Protein–protein interactions play a very important role in the process of cellular functionality. Intricate details about the interactions between the proteins in a macromolecular assembly are important to understand the function and significance of protein complexes. We are reporting about a databa...

Descripción completa

Detalles Bibliográficos
Autores principales: Mathew, Oommen K., Sowdhamini, Ramanathan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Libertas Academica 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4954588/
https://www.ncbi.nlm.nih.gov/pubmed/27478368
http://dx.doi.org/10.4137/BBI.S38416
_version_ 1782443797009924096
author Mathew, Oommen K.
Sowdhamini, Ramanathan
author_facet Mathew, Oommen K.
Sowdhamini, Ramanathan
author_sort Mathew, Oommen K.
collection PubMed
description Protein–protein interactions play a very important role in the process of cellular functionality. Intricate details about the interactions between the proteins in a macromolecular assembly are important to understand the function and significance of protein complexes. We are reporting about a database of protein–protein interactions in huge macromolecular assemblies (PIMADb) that records the intrinsic details of 189,532 interchain interactions in 40,049 complexes from the Protein Data Bank. These details include the results of the quantification and analysis of all the interactions in the complex. The availability of interprotomer interaction networks can enable the design of point mutation experiments. PIMADb can be accessed from the URL: http://caps.ncbs.res.in/pimadb
format Online
Article
Text
id pubmed-4954588
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Libertas Academica
record_format MEDLINE/PubMed
spelling pubmed-49545882016-07-29 PIMADb: A Database of Protein–Protein Interactions in Huge Macromolecular Assemblies Mathew, Oommen K. Sowdhamini, Ramanathan Bioinform Biol Insights Original Research Protein–protein interactions play a very important role in the process of cellular functionality. Intricate details about the interactions between the proteins in a macromolecular assembly are important to understand the function and significance of protein complexes. We are reporting about a database of protein–protein interactions in huge macromolecular assemblies (PIMADb) that records the intrinsic details of 189,532 interchain interactions in 40,049 complexes from the Protein Data Bank. These details include the results of the quantification and analysis of all the interactions in the complex. The availability of interprotomer interaction networks can enable the design of point mutation experiments. PIMADb can be accessed from the URL: http://caps.ncbs.res.in/pimadb Libertas Academica 2016-07-19 /pmc/articles/PMC4954588/ /pubmed/27478368 http://dx.doi.org/10.4137/BBI.S38416 Text en © 2016 the author(s), publisher and licensee Libertas Academica Ltd. This is an open-access article distributed under the terms of the Creative Commons CC-BY-NC 3.0 license.
spellingShingle Original Research
Mathew, Oommen K.
Sowdhamini, Ramanathan
PIMADb: A Database of Protein–Protein Interactions in Huge Macromolecular Assemblies
title PIMADb: A Database of Protein–Protein Interactions in Huge Macromolecular Assemblies
title_full PIMADb: A Database of Protein–Protein Interactions in Huge Macromolecular Assemblies
title_fullStr PIMADb: A Database of Protein–Protein Interactions in Huge Macromolecular Assemblies
title_full_unstemmed PIMADb: A Database of Protein–Protein Interactions in Huge Macromolecular Assemblies
title_short PIMADb: A Database of Protein–Protein Interactions in Huge Macromolecular Assemblies
title_sort pimadb: a database of protein–protein interactions in huge macromolecular assemblies
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4954588/
https://www.ncbi.nlm.nih.gov/pubmed/27478368
http://dx.doi.org/10.4137/BBI.S38416
work_keys_str_mv AT mathewoommenk pimadbadatabaseofproteinproteininteractionsinhugemacromolecularassemblies
AT sowdhaminiramanathan pimadbadatabaseofproteinproteininteractionsinhugemacromolecularassemblies