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Normalization methods in time series of platelet function assays: A SQUIRE compliant study

Platelet function can be quantitatively assessed by specific assays such as light-transmission aggregometry, multiple-electrode aggregometry measuring the response to adenosine diphosphate (ADP), arachidonic acid, collagen, and thrombin-receptor activating peptide and viscoelastic tests such as rota...

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Autores principales: Van Poucke, Sven, Zhang, Zhongheng, Roest, Mark, Vukicevic, Milan, Beran, Maud, Lauwereins, Bart, Zheng, Ming-Hua, Henskens, Yvonne, Lancé, Marcus, Marcus, Abraham
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer Health 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4956811/
https://www.ncbi.nlm.nih.gov/pubmed/27428217
http://dx.doi.org/10.1097/MD.0000000000004188
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author Van Poucke, Sven
Zhang, Zhongheng
Roest, Mark
Vukicevic, Milan
Beran, Maud
Lauwereins, Bart
Zheng, Ming-Hua
Henskens, Yvonne
Lancé, Marcus
Marcus, Abraham
author_facet Van Poucke, Sven
Zhang, Zhongheng
Roest, Mark
Vukicevic, Milan
Beran, Maud
Lauwereins, Bart
Zheng, Ming-Hua
Henskens, Yvonne
Lancé, Marcus
Marcus, Abraham
author_sort Van Poucke, Sven
collection PubMed
description Platelet function can be quantitatively assessed by specific assays such as light-transmission aggregometry, multiple-electrode aggregometry measuring the response to adenosine diphosphate (ADP), arachidonic acid, collagen, and thrombin-receptor activating peptide and viscoelastic tests such as rotational thromboelastometry (ROTEM). The task of extracting meaningful statistical and clinical information from high-dimensional data spaces in temporal multivariate clinical data represented in multivariate time series is complex. Building insightful visualizations for multivariate time series demands adequate usage of normalization techniques. In this article, various methods for data normalization (z-transformation, range transformation, proportion transformation, and interquartile range) are presented and visualized discussing the most suited approach for platelet function data series. Normalization was calculated per assay (test) for all time points and per time point for all tests. Interquartile range, range transformation, and z-transformation demonstrated the correlation as calculated by the Spearman correlation test, when normalized per assay (test) for all time points. When normalizing per time point for all tests, no correlation could be abstracted from the charts as was the case when using all data as 1 dataset for normalization.
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spelling pubmed-49568112016-08-02 Normalization methods in time series of platelet function assays: A SQUIRE compliant study Van Poucke, Sven Zhang, Zhongheng Roest, Mark Vukicevic, Milan Beran, Maud Lauwereins, Bart Zheng, Ming-Hua Henskens, Yvonne Lancé, Marcus Marcus, Abraham Medicine (Baltimore) 3700 Platelet function can be quantitatively assessed by specific assays such as light-transmission aggregometry, multiple-electrode aggregometry measuring the response to adenosine diphosphate (ADP), arachidonic acid, collagen, and thrombin-receptor activating peptide and viscoelastic tests such as rotational thromboelastometry (ROTEM). The task of extracting meaningful statistical and clinical information from high-dimensional data spaces in temporal multivariate clinical data represented in multivariate time series is complex. Building insightful visualizations for multivariate time series demands adequate usage of normalization techniques. In this article, various methods for data normalization (z-transformation, range transformation, proportion transformation, and interquartile range) are presented and visualized discussing the most suited approach for platelet function data series. Normalization was calculated per assay (test) for all time points and per time point for all tests. Interquartile range, range transformation, and z-transformation demonstrated the correlation as calculated by the Spearman correlation test, when normalized per assay (test) for all time points. When normalizing per time point for all tests, no correlation could be abstracted from the charts as was the case when using all data as 1 dataset for normalization. Wolters Kluwer Health 2016-07-18 /pmc/articles/PMC4956811/ /pubmed/27428217 http://dx.doi.org/10.1097/MD.0000000000004188 Text en Copyright © 2016 the Author(s). Published by Wolters Kluwer Health, Inc. All rights reserved. http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the Creative Commons Attribution License 4.0, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/licenses/by/4.0
spellingShingle 3700
Van Poucke, Sven
Zhang, Zhongheng
Roest, Mark
Vukicevic, Milan
Beran, Maud
Lauwereins, Bart
Zheng, Ming-Hua
Henskens, Yvonne
Lancé, Marcus
Marcus, Abraham
Normalization methods in time series of platelet function assays: A SQUIRE compliant study
title Normalization methods in time series of platelet function assays: A SQUIRE compliant study
title_full Normalization methods in time series of platelet function assays: A SQUIRE compliant study
title_fullStr Normalization methods in time series of platelet function assays: A SQUIRE compliant study
title_full_unstemmed Normalization methods in time series of platelet function assays: A SQUIRE compliant study
title_short Normalization methods in time series of platelet function assays: A SQUIRE compliant study
title_sort normalization methods in time series of platelet function assays: a squire compliant study
topic 3700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4956811/
https://www.ncbi.nlm.nih.gov/pubmed/27428217
http://dx.doi.org/10.1097/MD.0000000000004188
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