The Nipponbare genome and the next-generation of rice genomics research in Japan

The map-based genome sequence of the japonica rice cultivar Nipponbare remains to date as the only monocot genome that has been sequenced to a high-quality level. It has become the reference sequence for understanding the diversity among thousands of rice cultivars and its wild relatives as well as...

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Autores principales: Matsumoto, Takashi, Wu, Jianzhong, Itoh, Takeshi, Numa, Hisataka, Antonio, Baltazar, Sasaki, Takuji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2016
Materias:
Review
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4958085/
https://www.ncbi.nlm.nih.gov/pubmed/27447712
http://dx.doi.org/10.1186/s12284-016-0107-4
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author Matsumoto, Takashi
Wu, Jianzhong
Itoh, Takeshi
Numa, Hisataka
Antonio, Baltazar
Sasaki, Takuji
author_facet Matsumoto, Takashi
Wu, Jianzhong
Itoh, Takeshi
Numa, Hisataka
Antonio, Baltazar
Sasaki, Takuji
author_sort Matsumoto, Takashi
collection PubMed
description The map-based genome sequence of the japonica rice cultivar Nipponbare remains to date as the only monocot genome that has been sequenced to a high-quality level. It has become the reference sequence for understanding the diversity among thousands of rice cultivars and its wild relatives as well as the major cereal crops that comprised the food source for the entire human race. This review focuses on the accomplishments in rice genomics in Japan encompassing the last 10 years which have led into deeper understanding of the genome, characterization of many agronomic traits, comprehensive analysis of the transcriptome, and the map-based cloning of many genes associated with agronomic traits. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12284-016-0107-4) contains supplementary material, which is available to authorized users.
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spelling pubmed-49580852016-08-01 The Nipponbare genome and the next-generation of rice genomics research in Japan Matsumoto, Takashi Wu, Jianzhong Itoh, Takeshi Numa, Hisataka Antonio, Baltazar Sasaki, Takuji Rice (N Y) Review The map-based genome sequence of the japonica rice cultivar Nipponbare remains to date as the only monocot genome that has been sequenced to a high-quality level. It has become the reference sequence for understanding the diversity among thousands of rice cultivars and its wild relatives as well as the major cereal crops that comprised the food source for the entire human race. This review focuses on the accomplishments in rice genomics in Japan encompassing the last 10 years which have led into deeper understanding of the genome, characterization of many agronomic traits, comprehensive analysis of the transcriptome, and the map-based cloning of many genes associated with agronomic traits. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12284-016-0107-4) contains supplementary material, which is available to authorized users. Springer US 2016-07-22 /pmc/articles/PMC4958085/ /pubmed/27447712 http://dx.doi.org/10.1186/s12284-016-0107-4 Text en © Matsumoto et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Review
Matsumoto, Takashi
Wu, Jianzhong
Itoh, Takeshi
Numa, Hisataka
Antonio, Baltazar
Sasaki, Takuji
The Nipponbare genome and the next-generation of rice genomics research in Japan
title The Nipponbare genome and the next-generation of rice genomics research in Japan
title_full The Nipponbare genome and the next-generation of rice genomics research in Japan
title_fullStr The Nipponbare genome and the next-generation of rice genomics research in Japan
title_full_unstemmed The Nipponbare genome and the next-generation of rice genomics research in Japan
title_short The Nipponbare genome and the next-generation of rice genomics research in Japan
title_sort nipponbare genome and the next-generation of rice genomics research in japan
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4958085/
https://www.ncbi.nlm.nih.gov/pubmed/27447712
http://dx.doi.org/10.1186/s12284-016-0107-4
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