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RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results
As the use of large-scale data-driven analysis becomes increasingly common, the need for robust methods for interpreting a large number of results increases. To date, neuroimaging attempts to interpret large-scale activity or connectivity results often turn to existing neural mapping based on previo...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959697/ https://www.ncbi.nlm.nih.gov/pubmed/27455041 http://dx.doi.org/10.1371/journal.pone.0159643 |
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author | Maron-Katz, Adi Amar, David Simon, Eti Ben Hendler, Talma Shamir, Ron |
author_facet | Maron-Katz, Adi Amar, David Simon, Eti Ben Hendler, Talma Shamir, Ron |
author_sort | Maron-Katz, Adi |
collection | PubMed |
description | As the use of large-scale data-driven analysis becomes increasingly common, the need for robust methods for interpreting a large number of results increases. To date, neuroimaging attempts to interpret large-scale activity or connectivity results often turn to existing neural mapping based on previous literature. In case of a large number of results, manual selection or percent of overlap with existing maps is frequently used to facilitate interpretation, often without a clear statistical justification. Such methodology holds the risk of reporting false positive results and overlooking additional results. Here, we propose using enrichment analysis for improving the interpretation of large-scale neuroimaging results. We focus on two possible cases: position group analysis, where the identified results are a set of neural positions; and connection group analysis, where the identified results are a set of neural position-pairs (i.e. neural connections). We explore different models for detecting significant overrepresentation of known functional brain annotations using simulated and real data. We implemented our methods in a tool called RichMind, which provides both statistical significance reports and brain visualization. We demonstrate the abilities of RichMind by revisiting two previous fMRI studies. In both studies RichMind automatically highlighted most of the findings that were reported in the original studies as well as several additional findings that were overlooked. Hence, RichMind is a valuable new tool for rigorous inference from neuroimaging results. |
format | Online Article Text |
id | pubmed-4959697 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-49596972016-08-08 RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results Maron-Katz, Adi Amar, David Simon, Eti Ben Hendler, Talma Shamir, Ron PLoS One Research Article As the use of large-scale data-driven analysis becomes increasingly common, the need for robust methods for interpreting a large number of results increases. To date, neuroimaging attempts to interpret large-scale activity or connectivity results often turn to existing neural mapping based on previous literature. In case of a large number of results, manual selection or percent of overlap with existing maps is frequently used to facilitate interpretation, often without a clear statistical justification. Such methodology holds the risk of reporting false positive results and overlooking additional results. Here, we propose using enrichment analysis for improving the interpretation of large-scale neuroimaging results. We focus on two possible cases: position group analysis, where the identified results are a set of neural positions; and connection group analysis, where the identified results are a set of neural position-pairs (i.e. neural connections). We explore different models for detecting significant overrepresentation of known functional brain annotations using simulated and real data. We implemented our methods in a tool called RichMind, which provides both statistical significance reports and brain visualization. We demonstrate the abilities of RichMind by revisiting two previous fMRI studies. In both studies RichMind automatically highlighted most of the findings that were reported in the original studies as well as several additional findings that were overlooked. Hence, RichMind is a valuable new tool for rigorous inference from neuroimaging results. Public Library of Science 2016-07-25 /pmc/articles/PMC4959697/ /pubmed/27455041 http://dx.doi.org/10.1371/journal.pone.0159643 Text en © 2016 Maron-Katz et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Maron-Katz, Adi Amar, David Simon, Eti Ben Hendler, Talma Shamir, Ron RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results |
title | RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results |
title_full | RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results |
title_fullStr | RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results |
title_full_unstemmed | RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results |
title_short | RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results |
title_sort | richmind: a tool for improved inference from large-scale neuroimaging results |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959697/ https://www.ncbi.nlm.nih.gov/pubmed/27455041 http://dx.doi.org/10.1371/journal.pone.0159643 |
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