Cargando…

Evaluation of Reference Genes for Quantitative Real-Time PCR Analysis of the Gene Expression in Laticifers on the Basis of Latex Flow in Rubber Tree (Hevea brasiliensis Muell. Arg.)

Latex exploitation-caused latex flow is effective in enhancing latex regeneration in laticifer cells of rubber tree. It should be suitable for screening appropriate reference gene for analysis of the expression of latex regeneration-related genes by quantitative real-time PCR (qRT-PCR). In the prese...

Descripción completa

Detalles Bibliográficos
Autores principales: Chao, Jinquan, Yang, Shuguang, Chen, Yueyi, Tian, Wei-Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965454/
https://www.ncbi.nlm.nih.gov/pubmed/27524995
http://dx.doi.org/10.3389/fpls.2016.01149
_version_ 1782445256032124928
author Chao, Jinquan
Yang, Shuguang
Chen, Yueyi
Tian, Wei-Min
author_facet Chao, Jinquan
Yang, Shuguang
Chen, Yueyi
Tian, Wei-Min
author_sort Chao, Jinquan
collection PubMed
description Latex exploitation-caused latex flow is effective in enhancing latex regeneration in laticifer cells of rubber tree. It should be suitable for screening appropriate reference gene for analysis of the expression of latex regeneration-related genes by quantitative real-time PCR (qRT-PCR). In the present study, the expression stability of 23 candidate reference genes was evaluated on the basis of latex flow by using geNorm and NormFinder algorithms. Ubiquitin-protein ligase 2a (UBC2a) and ubiquitin-protein ligase 2b (UBC2b) were the two most stable genes among the selected candidate references in rubber tree clones with differential duration of latex flow. The two genes were also high-ranked in previous reference gene screening across different tissues and experimental conditions. By contrast, the transcripts of latex regeneration-related genes fluctuated significantly during latex flow. The results suggest that screening reference gene during latex flow should be an efficient and effective clue for selection of reference genes in qRT-PCR.
format Online
Article
Text
id pubmed-4965454
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-49654542016-08-12 Evaluation of Reference Genes for Quantitative Real-Time PCR Analysis of the Gene Expression in Laticifers on the Basis of Latex Flow in Rubber Tree (Hevea brasiliensis Muell. Arg.) Chao, Jinquan Yang, Shuguang Chen, Yueyi Tian, Wei-Min Front Plant Sci Plant Science Latex exploitation-caused latex flow is effective in enhancing latex regeneration in laticifer cells of rubber tree. It should be suitable for screening appropriate reference gene for analysis of the expression of latex regeneration-related genes by quantitative real-time PCR (qRT-PCR). In the present study, the expression stability of 23 candidate reference genes was evaluated on the basis of latex flow by using geNorm and NormFinder algorithms. Ubiquitin-protein ligase 2a (UBC2a) and ubiquitin-protein ligase 2b (UBC2b) were the two most stable genes among the selected candidate references in rubber tree clones with differential duration of latex flow. The two genes were also high-ranked in previous reference gene screening across different tissues and experimental conditions. By contrast, the transcripts of latex regeneration-related genes fluctuated significantly during latex flow. The results suggest that screening reference gene during latex flow should be an efficient and effective clue for selection of reference genes in qRT-PCR. Frontiers Media S.A. 2016-07-29 /pmc/articles/PMC4965454/ /pubmed/27524995 http://dx.doi.org/10.3389/fpls.2016.01149 Text en Copyright © 2016 Chao, Yang, Chen and Tian. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Chao, Jinquan
Yang, Shuguang
Chen, Yueyi
Tian, Wei-Min
Evaluation of Reference Genes for Quantitative Real-Time PCR Analysis of the Gene Expression in Laticifers on the Basis of Latex Flow in Rubber Tree (Hevea brasiliensis Muell. Arg.)
title Evaluation of Reference Genes for Quantitative Real-Time PCR Analysis of the Gene Expression in Laticifers on the Basis of Latex Flow in Rubber Tree (Hevea brasiliensis Muell. Arg.)
title_full Evaluation of Reference Genes for Quantitative Real-Time PCR Analysis of the Gene Expression in Laticifers on the Basis of Latex Flow in Rubber Tree (Hevea brasiliensis Muell. Arg.)
title_fullStr Evaluation of Reference Genes for Quantitative Real-Time PCR Analysis of the Gene Expression in Laticifers on the Basis of Latex Flow in Rubber Tree (Hevea brasiliensis Muell. Arg.)
title_full_unstemmed Evaluation of Reference Genes for Quantitative Real-Time PCR Analysis of the Gene Expression in Laticifers on the Basis of Latex Flow in Rubber Tree (Hevea brasiliensis Muell. Arg.)
title_short Evaluation of Reference Genes for Quantitative Real-Time PCR Analysis of the Gene Expression in Laticifers on the Basis of Latex Flow in Rubber Tree (Hevea brasiliensis Muell. Arg.)
title_sort evaluation of reference genes for quantitative real-time pcr analysis of the gene expression in laticifers on the basis of latex flow in rubber tree (hevea brasiliensis muell. arg.)
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965454/
https://www.ncbi.nlm.nih.gov/pubmed/27524995
http://dx.doi.org/10.3389/fpls.2016.01149
work_keys_str_mv AT chaojinquan evaluationofreferencegenesforquantitativerealtimepcranalysisofthegeneexpressioninlaticifersonthebasisoflatexflowinrubbertreeheveabrasiliensismuellarg
AT yangshuguang evaluationofreferencegenesforquantitativerealtimepcranalysisofthegeneexpressioninlaticifersonthebasisoflatexflowinrubbertreeheveabrasiliensismuellarg
AT chenyueyi evaluationofreferencegenesforquantitativerealtimepcranalysisofthegeneexpressioninlaticifersonthebasisoflatexflowinrubbertreeheveabrasiliensismuellarg
AT tianweimin evaluationofreferencegenesforquantitativerealtimepcranalysisofthegeneexpressioninlaticifersonthebasisoflatexflowinrubbertreeheveabrasiliensismuellarg