Cargando…
Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain
The elevational and latitudinal diversity patterns of microbial taxa have attracted great attention in the past decade. Recently, the distribution of functional attributes has been in the spotlight. Here, we report a study profiling soil microbial communities along an elevation gradient (500–2200 m)...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965465/ https://www.ncbi.nlm.nih.gov/pubmed/27524983 http://dx.doi.org/10.3389/fmicb.2016.01184 |
_version_ | 1782445258469015552 |
---|---|
author | Shen, Congcong Shi, Yu Ni, Yingying Deng, Ye Van Nostrand, Joy D. He, Zhili Zhou, Jizhong Chu, Haiyan |
author_facet | Shen, Congcong Shi, Yu Ni, Yingying Deng, Ye Van Nostrand, Joy D. He, Zhili Zhou, Jizhong Chu, Haiyan |
author_sort | Shen, Congcong |
collection | PubMed |
description | The elevational and latitudinal diversity patterns of microbial taxa have attracted great attention in the past decade. Recently, the distribution of functional attributes has been in the spotlight. Here, we report a study profiling soil microbial communities along an elevation gradient (500–2200 m) on Changbai Mountain. Using a comprehensive functional gene microarray (GeoChip 5.0), we found that microbial functional gene richness exhibited a dramatic increase at the treeline ecotone, but the bacterial taxonomic and phylogenetic diversity based on 16S rRNA gene sequencing did not exhibit such a similar trend. However, the β-diversity (compositional dissimilarity among sites) pattern for both bacterial taxa and functional genes was similar, showing significant elevational distance-decay patterns which presented increased dissimilarity with elevation. The bacterial taxonomic diversity/structure was strongly influenced by soil pH, while the functional gene diversity/structure was significantly correlated with soil dissolved organic carbon (DOC). This finding highlights that soil DOC may be a good predictor in determining the elevational distribution of microbial functional genes. The finding of significant shifts in functional gene diversity at the treeline ecotone could also provide valuable information for predicting the responses of microbial functions to climate change. |
format | Online Article Text |
id | pubmed-4965465 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-49654652016-08-12 Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain Shen, Congcong Shi, Yu Ni, Yingying Deng, Ye Van Nostrand, Joy D. He, Zhili Zhou, Jizhong Chu, Haiyan Front Microbiol Microbiology The elevational and latitudinal diversity patterns of microbial taxa have attracted great attention in the past decade. Recently, the distribution of functional attributes has been in the spotlight. Here, we report a study profiling soil microbial communities along an elevation gradient (500–2200 m) on Changbai Mountain. Using a comprehensive functional gene microarray (GeoChip 5.0), we found that microbial functional gene richness exhibited a dramatic increase at the treeline ecotone, but the bacterial taxonomic and phylogenetic diversity based on 16S rRNA gene sequencing did not exhibit such a similar trend. However, the β-diversity (compositional dissimilarity among sites) pattern for both bacterial taxa and functional genes was similar, showing significant elevational distance-decay patterns which presented increased dissimilarity with elevation. The bacterial taxonomic diversity/structure was strongly influenced by soil pH, while the functional gene diversity/structure was significantly correlated with soil dissolved organic carbon (DOC). This finding highlights that soil DOC may be a good predictor in determining the elevational distribution of microbial functional genes. The finding of significant shifts in functional gene diversity at the treeline ecotone could also provide valuable information for predicting the responses of microbial functions to climate change. Frontiers Media S.A. 2016-07-29 /pmc/articles/PMC4965465/ /pubmed/27524983 http://dx.doi.org/10.3389/fmicb.2016.01184 Text en Copyright © 2016 Shen, Shi, Ni, Deng, Van Nostrand, He, Zhou and Chu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Shen, Congcong Shi, Yu Ni, Yingying Deng, Ye Van Nostrand, Joy D. He, Zhili Zhou, Jizhong Chu, Haiyan Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain |
title | Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain |
title_full | Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain |
title_fullStr | Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain |
title_full_unstemmed | Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain |
title_short | Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain |
title_sort | dramatic increases of soil microbial functional gene diversity at the treeline ecotone of changbai mountain |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965465/ https://www.ncbi.nlm.nih.gov/pubmed/27524983 http://dx.doi.org/10.3389/fmicb.2016.01184 |
work_keys_str_mv | AT shencongcong dramaticincreasesofsoilmicrobialfunctionalgenediversityatthetreelineecotoneofchangbaimountain AT shiyu dramaticincreasesofsoilmicrobialfunctionalgenediversityatthetreelineecotoneofchangbaimountain AT niyingying dramaticincreasesofsoilmicrobialfunctionalgenediversityatthetreelineecotoneofchangbaimountain AT dengye dramaticincreasesofsoilmicrobialfunctionalgenediversityatthetreelineecotoneofchangbaimountain AT vannostrandjoyd dramaticincreasesofsoilmicrobialfunctionalgenediversityatthetreelineecotoneofchangbaimountain AT hezhili dramaticincreasesofsoilmicrobialfunctionalgenediversityatthetreelineecotoneofchangbaimountain AT zhoujizhong dramaticincreasesofsoilmicrobialfunctionalgenediversityatthetreelineecotoneofchangbaimountain AT chuhaiyan dramaticincreasesofsoilmicrobialfunctionalgenediversityatthetreelineecotoneofchangbaimountain |