Simulated single molecule microscopy with SMeagol

Summary: SMeagol is a software tool to simulate highly realistic microscopy data based on spatial systems biology models, in order to facilitate development, validation and optimization of advanced analysis methods for live cell single molecule microscopy data. Availability and implementation: SMeag...

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Autores principales: Lindén, Martin, Ćurić, Vladimir, Boucharin, Alexis, Fange, David, Elf, Johan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965627/
https://www.ncbi.nlm.nih.gov/pubmed/27153711
http://dx.doi.org/10.1093/bioinformatics/btw109
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author Lindén, Martin
Ćurić, Vladimir
Boucharin, Alexis
Fange, David
Elf, Johan
author_facet Lindén, Martin
Ćurić, Vladimir
Boucharin, Alexis
Fange, David
Elf, Johan
author_sort Lindén, Martin
collection PubMed
description Summary: SMeagol is a software tool to simulate highly realistic microscopy data based on spatial systems biology models, in order to facilitate development, validation and optimization of advanced analysis methods for live cell single molecule microscopy data. Availability and implementation: SMeagol runs on Matlab R2014 and later, and uses compiled binaries in C for reaction–diffusion simulations. Documentation, source code and binaries for Mac OS, Windows and Ubuntu Linux can be downloaded from http://smeagol.sourceforge.net. Contact: johan.elf@icm.uu.se Supplementary information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-49656272016-08-01 Simulated single molecule microscopy with SMeagol Lindén, Martin Ćurić, Vladimir Boucharin, Alexis Fange, David Elf, Johan Bioinformatics Applications Notes Summary: SMeagol is a software tool to simulate highly realistic microscopy data based on spatial systems biology models, in order to facilitate development, validation and optimization of advanced analysis methods for live cell single molecule microscopy data. Availability and implementation: SMeagol runs on Matlab R2014 and later, and uses compiled binaries in C for reaction–diffusion simulations. Documentation, source code and binaries for Mac OS, Windows and Ubuntu Linux can be downloaded from http://smeagol.sourceforge.net. Contact: johan.elf@icm.uu.se Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2016-08-01 2016-03-04 /pmc/articles/PMC4965627/ /pubmed/27153711 http://dx.doi.org/10.1093/bioinformatics/btw109 Text en © The Author 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Lindén, Martin
Ćurić, Vladimir
Boucharin, Alexis
Fange, David
Elf, Johan
Simulated single molecule microscopy with SMeagol
title Simulated single molecule microscopy with SMeagol
title_full Simulated single molecule microscopy with SMeagol
title_fullStr Simulated single molecule microscopy with SMeagol
title_full_unstemmed Simulated single molecule microscopy with SMeagol
title_short Simulated single molecule microscopy with SMeagol
title_sort simulated single molecule microscopy with smeagol
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965627/
https://www.ncbi.nlm.nih.gov/pubmed/27153711
http://dx.doi.org/10.1093/bioinformatics/btw109
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