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A multi-site cutting device implements efficiently the divide-and-conquer strategy in tumor sampling
We recently showed that in order to detect intra-tumor heterogeneity a Divide-and-Conquer (DAC) strategy of tumor sampling outperforms current routine protocols. This paper is a continuation of this work, but here we focus on DAC implementation in the Pathology Laboratory. In particular, we describe...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000Research
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965694/ https://www.ncbi.nlm.nih.gov/pubmed/27540472 http://dx.doi.org/10.12688/f1000research.9091.2 |
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author | Lopez, Jose I. Cortes, Jesus M. |
author_facet | Lopez, Jose I. Cortes, Jesus M. |
author_sort | Lopez, Jose I. |
collection | PubMed |
description | We recently showed that in order to detect intra-tumor heterogeneity a Divide-and-Conquer (DAC) strategy of tumor sampling outperforms current routine protocols. This paper is a continuation of this work, but here we focus on DAC implementation in the Pathology Laboratory. In particular, we describe a new simple method that makes use of a cutting grid device and is applied to clear cell renal cell carcinomas for DAC implementation. This method assures a thorough sampling of large surgical specimens, facilitates the demonstration of intratumor heterogeneity, and saves time to pathologists in the daily practice. The method involves the following steps: 1. Thin slicing of the tumor (by hand or machine), 2. Application of a cutting grid to the slices ( e.g., a French fry cutter), resulting in multiple tissue cubes with fixed position within the slice, 3. Selection of tissue cubes for analysis, and finally, 4. Inclusion of selected cubes into a cassette for histological processing (with about eight tissue fragments within each cassette). Thus, using our approach in a 10 cm in-diameter-tumor we generate 80 tumor tissue fragments placed in 10 cassettes and, notably, in a tenth of time. Eighty samples obtained across all the regions of the tumor will assure a much higher performance in detecting intratumor heterogeneity, as proved recently with synthetic data. |
format | Online Article Text |
id | pubmed-4965694 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | F1000Research |
record_format | MEDLINE/PubMed |
spelling | pubmed-49656942016-08-17 A multi-site cutting device implements efficiently the divide-and-conquer strategy in tumor sampling Lopez, Jose I. Cortes, Jesus M. F1000Res Research Note We recently showed that in order to detect intra-tumor heterogeneity a Divide-and-Conquer (DAC) strategy of tumor sampling outperforms current routine protocols. This paper is a continuation of this work, but here we focus on DAC implementation in the Pathology Laboratory. In particular, we describe a new simple method that makes use of a cutting grid device and is applied to clear cell renal cell carcinomas for DAC implementation. This method assures a thorough sampling of large surgical specimens, facilitates the demonstration of intratumor heterogeneity, and saves time to pathologists in the daily practice. The method involves the following steps: 1. Thin slicing of the tumor (by hand or machine), 2. Application of a cutting grid to the slices ( e.g., a French fry cutter), resulting in multiple tissue cubes with fixed position within the slice, 3. Selection of tissue cubes for analysis, and finally, 4. Inclusion of selected cubes into a cassette for histological processing (with about eight tissue fragments within each cassette). Thus, using our approach in a 10 cm in-diameter-tumor we generate 80 tumor tissue fragments placed in 10 cassettes and, notably, in a tenth of time. Eighty samples obtained across all the regions of the tumor will assure a much higher performance in detecting intratumor heterogeneity, as proved recently with synthetic data. F1000Research 2016-07-26 /pmc/articles/PMC4965694/ /pubmed/27540472 http://dx.doi.org/10.12688/f1000research.9091.2 Text en Copyright: © 2016 Lopez JI and Cortes JM http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Note Lopez, Jose I. Cortes, Jesus M. A multi-site cutting device implements efficiently the divide-and-conquer strategy in tumor sampling |
title | A multi-site cutting device implements efficiently the divide-and-conquer strategy in tumor sampling |
title_full | A multi-site cutting device implements efficiently the divide-and-conquer strategy in tumor sampling |
title_fullStr | A multi-site cutting device implements efficiently the divide-and-conquer strategy in tumor sampling |
title_full_unstemmed | A multi-site cutting device implements efficiently the divide-and-conquer strategy in tumor sampling |
title_short | A multi-site cutting device implements efficiently the divide-and-conquer strategy in tumor sampling |
title_sort | multi-site cutting device implements efficiently the divide-and-conquer strategy in tumor sampling |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965694/ https://www.ncbi.nlm.nih.gov/pubmed/27540472 http://dx.doi.org/10.12688/f1000research.9091.2 |
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