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Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies

Physical properties of sediments are commonly used to define subsurface lithofacies and these same physical properties influence subsurface microbial communities. This suggests an (unexploited) opportunity to use the spatial distribution of facies to predict spatial variation in biogeochemically rel...

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Autores principales: Stegen, James C., Konopka, Allan, McKinley, James P., Murray, Chris, Lin, Xueju, Miller, Micah D., Kennedy, David W., Miller, Erin A., Resch, Charles T., Fredrickson, Jim K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965824/
https://www.ncbi.nlm.nih.gov/pubmed/27469056
http://dx.doi.org/10.1038/srep30553
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author Stegen, James C.
Konopka, Allan
McKinley, James P.
Murray, Chris
Lin, Xueju
Miller, Micah D.
Kennedy, David W.
Miller, Erin A.
Resch, Charles T.
Fredrickson, Jim K.
author_facet Stegen, James C.
Konopka, Allan
McKinley, James P.
Murray, Chris
Lin, Xueju
Miller, Micah D.
Kennedy, David W.
Miller, Erin A.
Resch, Charles T.
Fredrickson, Jim K.
author_sort Stegen, James C.
collection PubMed
description Physical properties of sediments are commonly used to define subsurface lithofacies and these same physical properties influence subsurface microbial communities. This suggests an (unexploited) opportunity to use the spatial distribution of facies to predict spatial variation in biogeochemically relevant microbial attributes. Here, we characterize three biogeochemical facies—oxidized, reduced, and transition—within one lithofacies and elucidate relationships among facies features and microbial community biomass, richness, and composition. Consistent with previous observations of biogeochemical hotspots at environmental transition zones, we find elevated biomass within a biogeochemical facies that occurred at the transition between oxidized and reduced biogeochemical facies. Microbial richness—the number of microbial taxa—was lower within the reduced facies and was well-explained by a combination of pH and mineralogy. Null modeling revealed that microbial community composition was influenced by ecological selection imposed by redox state and mineralogy, possibly due to effects on nutrient availability or transport. As an illustrative case, we predict microbial biomass concentration across a three-dimensional spatial domain by coupling the spatial distribution of subsurface biogeochemical facies with biomass-facies relationships revealed here. We expect that merging such an approach with hydro-biogeochemical models will provide important constraints on simulated dynamics, thereby reducing uncertainty in model predictions.
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spelling pubmed-49658242016-08-08 Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies Stegen, James C. Konopka, Allan McKinley, James P. Murray, Chris Lin, Xueju Miller, Micah D. Kennedy, David W. Miller, Erin A. Resch, Charles T. Fredrickson, Jim K. Sci Rep Article Physical properties of sediments are commonly used to define subsurface lithofacies and these same physical properties influence subsurface microbial communities. This suggests an (unexploited) opportunity to use the spatial distribution of facies to predict spatial variation in biogeochemically relevant microbial attributes. Here, we characterize three biogeochemical facies—oxidized, reduced, and transition—within one lithofacies and elucidate relationships among facies features and microbial community biomass, richness, and composition. Consistent with previous observations of biogeochemical hotspots at environmental transition zones, we find elevated biomass within a biogeochemical facies that occurred at the transition between oxidized and reduced biogeochemical facies. Microbial richness—the number of microbial taxa—was lower within the reduced facies and was well-explained by a combination of pH and mineralogy. Null modeling revealed that microbial community composition was influenced by ecological selection imposed by redox state and mineralogy, possibly due to effects on nutrient availability or transport. As an illustrative case, we predict microbial biomass concentration across a three-dimensional spatial domain by coupling the spatial distribution of subsurface biogeochemical facies with biomass-facies relationships revealed here. We expect that merging such an approach with hydro-biogeochemical models will provide important constraints on simulated dynamics, thereby reducing uncertainty in model predictions. Nature Publishing Group 2016-07-29 /pmc/articles/PMC4965824/ /pubmed/27469056 http://dx.doi.org/10.1038/srep30553 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Stegen, James C.
Konopka, Allan
McKinley, James P.
Murray, Chris
Lin, Xueju
Miller, Micah D.
Kennedy, David W.
Miller, Erin A.
Resch, Charles T.
Fredrickson, Jim K.
Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies
title Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies
title_full Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies
title_fullStr Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies
title_full_unstemmed Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies
title_short Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies
title_sort coupling among microbial communities, biogeochemistry, and mineralogy across biogeochemical facies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965824/
https://www.ncbi.nlm.nih.gov/pubmed/27469056
http://dx.doi.org/10.1038/srep30553
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