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Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser
Free-electron lasers (FEL) hold the potential to revolutionize structural biology by producing X-ray pules short enough to outrun radiation damage, thus allowing imaging of biological samples without the limitation from radiation damage. Thus, a major part of the scientific case for the first FELs w...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968188/ https://www.ncbi.nlm.nih.gov/pubmed/27479754 http://dx.doi.org/10.1038/sdata.2016.60 |
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author | Ekeberg, Tomas Svenda, Martin Seibert, M. Marvin Abergel, Chantal Maia, Filipe R.N.C. Seltzer, Virginie DePonte, Daniel P. Aquila, Andrew Andreasson, Jakob Iwan, Bianca Jönsson, Olof Westphal, Daniel Odić, Duško Andersson, Inger Barty, Anton Liang, Meng Martin, Andrew V. Gumprecht, Lars Fleckenstein, Holger Bajt, Saša Barthelmess, Miriam Coppola, Nicola Claverie, Jean-Michel Loh, N. Duane Bostedt, Christoph Bozek, John D. Krzywinski, Jacek Messerschmidt, Marc Bogan, Michael J. Hampton, Christina Y. Sierra, Raymond G. Frank, Matthias Shoeman, Robert L. Lomb, Lukas Foucar, Lutz Epp, Sascha W. Rolles, Daniel Rudenko, Artem Hartmann, Robert Hartmann, Andreas Kimmel, Nils Holl, Peter Weidenspointner, Georg Rudek, Benedikt Erk, Benjamin Kassemeyer, Stephan Schlichting, Ilme Strüder, Lothar Ullrich, Joachim Schmidt, Carlo Krasniqi, Faton Hauser, Günter Reich, Christian Soltau, Heike Schorb, Sebastian Hirsemann, Helmut Wunderer, Cornelia Graafsma, Heinz Chapman, Henry Hajdu, Janos |
author_facet | Ekeberg, Tomas Svenda, Martin Seibert, M. Marvin Abergel, Chantal Maia, Filipe R.N.C. Seltzer, Virginie DePonte, Daniel P. Aquila, Andrew Andreasson, Jakob Iwan, Bianca Jönsson, Olof Westphal, Daniel Odić, Duško Andersson, Inger Barty, Anton Liang, Meng Martin, Andrew V. Gumprecht, Lars Fleckenstein, Holger Bajt, Saša Barthelmess, Miriam Coppola, Nicola Claverie, Jean-Michel Loh, N. Duane Bostedt, Christoph Bozek, John D. Krzywinski, Jacek Messerschmidt, Marc Bogan, Michael J. Hampton, Christina Y. Sierra, Raymond G. Frank, Matthias Shoeman, Robert L. Lomb, Lukas Foucar, Lutz Epp, Sascha W. Rolles, Daniel Rudenko, Artem Hartmann, Robert Hartmann, Andreas Kimmel, Nils Holl, Peter Weidenspointner, Georg Rudek, Benedikt Erk, Benjamin Kassemeyer, Stephan Schlichting, Ilme Strüder, Lothar Ullrich, Joachim Schmidt, Carlo Krasniqi, Faton Hauser, Günter Reich, Christian Soltau, Heike Schorb, Sebastian Hirsemann, Helmut Wunderer, Cornelia Graafsma, Heinz Chapman, Henry Hajdu, Janos |
author_sort | Ekeberg, Tomas |
collection | PubMed |
description | Free-electron lasers (FEL) hold the potential to revolutionize structural biology by producing X-ray pules short enough to outrun radiation damage, thus allowing imaging of biological samples without the limitation from radiation damage. Thus, a major part of the scientific case for the first FELs was three-dimensional (3D) reconstruction of non-crystalline biological objects. In a recent publication we demonstrated the first 3D reconstruction of a biological object from an X-ray FEL using this technique. The sample was the giant Mimivirus, which is one of the largest known viruses with a diameter of 450 nm. Here we present the dataset used for this successful reconstruction. Data-analysis methods for single-particle imaging at FELs are undergoing heavy development but data collection relies on very limited time available through a highly competitive proposal process. This dataset provides experimental data to the entire community and could boost algorithm development and provide a benchmark dataset for new algorithms. |
format | Online Article Text |
id | pubmed-4968188 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-49681882016-08-08 Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser Ekeberg, Tomas Svenda, Martin Seibert, M. Marvin Abergel, Chantal Maia, Filipe R.N.C. Seltzer, Virginie DePonte, Daniel P. Aquila, Andrew Andreasson, Jakob Iwan, Bianca Jönsson, Olof Westphal, Daniel Odić, Duško Andersson, Inger Barty, Anton Liang, Meng Martin, Andrew V. Gumprecht, Lars Fleckenstein, Holger Bajt, Saša Barthelmess, Miriam Coppola, Nicola Claverie, Jean-Michel Loh, N. Duane Bostedt, Christoph Bozek, John D. Krzywinski, Jacek Messerschmidt, Marc Bogan, Michael J. Hampton, Christina Y. Sierra, Raymond G. Frank, Matthias Shoeman, Robert L. Lomb, Lukas Foucar, Lutz Epp, Sascha W. Rolles, Daniel Rudenko, Artem Hartmann, Robert Hartmann, Andreas Kimmel, Nils Holl, Peter Weidenspointner, Georg Rudek, Benedikt Erk, Benjamin Kassemeyer, Stephan Schlichting, Ilme Strüder, Lothar Ullrich, Joachim Schmidt, Carlo Krasniqi, Faton Hauser, Günter Reich, Christian Soltau, Heike Schorb, Sebastian Hirsemann, Helmut Wunderer, Cornelia Graafsma, Heinz Chapman, Henry Hajdu, Janos Sci Data Data Descriptor Free-electron lasers (FEL) hold the potential to revolutionize structural biology by producing X-ray pules short enough to outrun radiation damage, thus allowing imaging of biological samples without the limitation from radiation damage. Thus, a major part of the scientific case for the first FELs was three-dimensional (3D) reconstruction of non-crystalline biological objects. In a recent publication we demonstrated the first 3D reconstruction of a biological object from an X-ray FEL using this technique. The sample was the giant Mimivirus, which is one of the largest known viruses with a diameter of 450 nm. Here we present the dataset used for this successful reconstruction. Data-analysis methods for single-particle imaging at FELs are undergoing heavy development but data collection relies on very limited time available through a highly competitive proposal process. This dataset provides experimental data to the entire community and could boost algorithm development and provide a benchmark dataset for new algorithms. Nature Publishing Group 2016-08-01 /pmc/articles/PMC4968188/ /pubmed/27479754 http://dx.doi.org/10.1038/sdata.2016.60 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse. |
spellingShingle | Data Descriptor Ekeberg, Tomas Svenda, Martin Seibert, M. Marvin Abergel, Chantal Maia, Filipe R.N.C. Seltzer, Virginie DePonte, Daniel P. Aquila, Andrew Andreasson, Jakob Iwan, Bianca Jönsson, Olof Westphal, Daniel Odić, Duško Andersson, Inger Barty, Anton Liang, Meng Martin, Andrew V. Gumprecht, Lars Fleckenstein, Holger Bajt, Saša Barthelmess, Miriam Coppola, Nicola Claverie, Jean-Michel Loh, N. Duane Bostedt, Christoph Bozek, John D. Krzywinski, Jacek Messerschmidt, Marc Bogan, Michael J. Hampton, Christina Y. Sierra, Raymond G. Frank, Matthias Shoeman, Robert L. Lomb, Lukas Foucar, Lutz Epp, Sascha W. Rolles, Daniel Rudenko, Artem Hartmann, Robert Hartmann, Andreas Kimmel, Nils Holl, Peter Weidenspointner, Georg Rudek, Benedikt Erk, Benjamin Kassemeyer, Stephan Schlichting, Ilme Strüder, Lothar Ullrich, Joachim Schmidt, Carlo Krasniqi, Faton Hauser, Günter Reich, Christian Soltau, Heike Schorb, Sebastian Hirsemann, Helmut Wunderer, Cornelia Graafsma, Heinz Chapman, Henry Hajdu, Janos Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser |
title | Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser |
title_full | Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser |
title_fullStr | Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser |
title_full_unstemmed | Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser |
title_short | Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser |
title_sort | single-shot diffraction data from the mimivirus particle using an x-ray free-electron laser |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968188/ https://www.ncbi.nlm.nih.gov/pubmed/27479754 http://dx.doi.org/10.1038/sdata.2016.60 |
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