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Serial femtosecond crystallography datasets from G protein-coupled receptors

We describe the deposition of four datasets consisting of X-ray diffraction images acquired using serial femtosecond crystallography experiments on microcrystals of human G protein-coupled receptors, grown and delivered in lipidic cubic phase, at the Linac Coherent Light Source. The receptors are: t...

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Autores principales: White, Thomas A., Barty, Anton, Liu, Wei, Ishchenko, Andrii, Zhang, Haitao, Gati, Cornelius, Zatsepin, Nadia A., Basu, Shibom, Oberthür, Dominik, Metz, Markus, Beyerlein, Kenneth R., Yoon, Chun Hong, Yefanov, Oleksandr M., James, Daniel, Wang, Dingjie, Messerschmidt, Marc, Koglin, Jason E., Boutet, Sébastien, Weierstall, Uwe, Cherezov, Vadim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968193/
https://www.ncbi.nlm.nih.gov/pubmed/27479354
http://dx.doi.org/10.1038/sdata.2016.57
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author White, Thomas A.
Barty, Anton
Liu, Wei
Ishchenko, Andrii
Zhang, Haitao
Gati, Cornelius
Zatsepin, Nadia A.
Basu, Shibom
Oberthür, Dominik
Metz, Markus
Beyerlein, Kenneth R.
Yoon, Chun Hong
Yefanov, Oleksandr M.
James, Daniel
Wang, Dingjie
Messerschmidt, Marc
Koglin, Jason E.
Boutet, Sébastien
Weierstall, Uwe
Cherezov, Vadim
author_facet White, Thomas A.
Barty, Anton
Liu, Wei
Ishchenko, Andrii
Zhang, Haitao
Gati, Cornelius
Zatsepin, Nadia A.
Basu, Shibom
Oberthür, Dominik
Metz, Markus
Beyerlein, Kenneth R.
Yoon, Chun Hong
Yefanov, Oleksandr M.
James, Daniel
Wang, Dingjie
Messerschmidt, Marc
Koglin, Jason E.
Boutet, Sébastien
Weierstall, Uwe
Cherezov, Vadim
author_sort White, Thomas A.
collection PubMed
description We describe the deposition of four datasets consisting of X-ray diffraction images acquired using serial femtosecond crystallography experiments on microcrystals of human G protein-coupled receptors, grown and delivered in lipidic cubic phase, at the Linac Coherent Light Source. The receptors are: the human serotonin receptor 2B in complex with an agonist ergotamine, the human δ-opioid receptor in complex with a bi-functional peptide ligand DIPP-NH(2), the human smoothened receptor in complex with an antagonist cyclopamine, and finally the human angiotensin II type 1 receptor in complex with the selective antagonist ZD7155. All four datasets have been deposited, with minimal processing, in an HDF5-based file format, which can be used directly for crystallographic processing with CrystFEL or other software. We have provided processing scripts and supporting files for recent versions of CrystFEL, which can be used to validate the data.
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spelling pubmed-49681932016-08-08 Serial femtosecond crystallography datasets from G protein-coupled receptors White, Thomas A. Barty, Anton Liu, Wei Ishchenko, Andrii Zhang, Haitao Gati, Cornelius Zatsepin, Nadia A. Basu, Shibom Oberthür, Dominik Metz, Markus Beyerlein, Kenneth R. Yoon, Chun Hong Yefanov, Oleksandr M. James, Daniel Wang, Dingjie Messerschmidt, Marc Koglin, Jason E. Boutet, Sébastien Weierstall, Uwe Cherezov, Vadim Sci Data Data Descriptor We describe the deposition of four datasets consisting of X-ray diffraction images acquired using serial femtosecond crystallography experiments on microcrystals of human G protein-coupled receptors, grown and delivered in lipidic cubic phase, at the Linac Coherent Light Source. The receptors are: the human serotonin receptor 2B in complex with an agonist ergotamine, the human δ-opioid receptor in complex with a bi-functional peptide ligand DIPP-NH(2), the human smoothened receptor in complex with an antagonist cyclopamine, and finally the human angiotensin II type 1 receptor in complex with the selective antagonist ZD7155. All four datasets have been deposited, with minimal processing, in an HDF5-based file format, which can be used directly for crystallographic processing with CrystFEL or other software. We have provided processing scripts and supporting files for recent versions of CrystFEL, which can be used to validate the data. Nature Publishing Group 2016-08-01 /pmc/articles/PMC4968193/ /pubmed/27479354 http://dx.doi.org/10.1038/sdata.2016.57 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse.
spellingShingle Data Descriptor
White, Thomas A.
Barty, Anton
Liu, Wei
Ishchenko, Andrii
Zhang, Haitao
Gati, Cornelius
Zatsepin, Nadia A.
Basu, Shibom
Oberthür, Dominik
Metz, Markus
Beyerlein, Kenneth R.
Yoon, Chun Hong
Yefanov, Oleksandr M.
James, Daniel
Wang, Dingjie
Messerschmidt, Marc
Koglin, Jason E.
Boutet, Sébastien
Weierstall, Uwe
Cherezov, Vadim
Serial femtosecond crystallography datasets from G protein-coupled receptors
title Serial femtosecond crystallography datasets from G protein-coupled receptors
title_full Serial femtosecond crystallography datasets from G protein-coupled receptors
title_fullStr Serial femtosecond crystallography datasets from G protein-coupled receptors
title_full_unstemmed Serial femtosecond crystallography datasets from G protein-coupled receptors
title_short Serial femtosecond crystallography datasets from G protein-coupled receptors
title_sort serial femtosecond crystallography datasets from g protein-coupled receptors
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968193/
https://www.ncbi.nlm.nih.gov/pubmed/27479354
http://dx.doi.org/10.1038/sdata.2016.57
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