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The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka
Till date, only one draft genome has been reported within the genus Mangrovibacter. Here, we report the second draft genome shotgun sequence of a Mangrovibacter sp. strain MP23 that was isolated from the roots of Phargmites karka (P. karka), an invasive weed growing in the Chilika Lagoon, Odisha, In...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971156/ https://www.ncbi.nlm.nih.gov/pubmed/27508122 http://dx.doi.org/10.1016/j.gdata.2016.07.007 |
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author | Behera, Pratiksha Vaishampayan, Parag Singh, Nitin K. Mishra, Samir R. Raina, Vishakha Suar, Mrutyunjay Pattnaik, Ajit K. Rastogi, Gurdeep |
author_facet | Behera, Pratiksha Vaishampayan, Parag Singh, Nitin K. Mishra, Samir R. Raina, Vishakha Suar, Mrutyunjay Pattnaik, Ajit K. Rastogi, Gurdeep |
author_sort | Behera, Pratiksha |
collection | PubMed |
description | Till date, only one draft genome has been reported within the genus Mangrovibacter. Here, we report the second draft genome shotgun sequence of a Mangrovibacter sp. strain MP23 that was isolated from the roots of Phargmites karka (P. karka), an invasive weed growing in the Chilika Lagoon, Odisha, India. Strain MP23 is a facultative anaerobic, nitrogen-fixing endophytic bacteria that grows optimally at 37 °C, 7.0 pH, and 1% NaCl concentration. The draft genome sequence of strain MP23 contains 4,947,475 bp with an estimated G + C content of 49.9% and total 4392 protein coding genes. The genome sequence has provided information on putative genes that code for proteins involved in oxidative stress, uptake of nutrients, and nitrogen fixation that might offer niche specific ecological fitness and explain the invasive success of P. karka in Chilika Lagoon. The draft genome sequence and annotation have been deposited at DDBJ/EMBL/GenBank under the accession number LYRP00000000. |
format | Online Article Text |
id | pubmed-4971156 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-49711562016-08-09 The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka Behera, Pratiksha Vaishampayan, Parag Singh, Nitin K. Mishra, Samir R. Raina, Vishakha Suar, Mrutyunjay Pattnaik, Ajit K. Rastogi, Gurdeep Genom Data Data in Brief Till date, only one draft genome has been reported within the genus Mangrovibacter. Here, we report the second draft genome shotgun sequence of a Mangrovibacter sp. strain MP23 that was isolated from the roots of Phargmites karka (P. karka), an invasive weed growing in the Chilika Lagoon, Odisha, India. Strain MP23 is a facultative anaerobic, nitrogen-fixing endophytic bacteria that grows optimally at 37 °C, 7.0 pH, and 1% NaCl concentration. The draft genome sequence of strain MP23 contains 4,947,475 bp with an estimated G + C content of 49.9% and total 4392 protein coding genes. The genome sequence has provided information on putative genes that code for proteins involved in oxidative stress, uptake of nutrients, and nitrogen fixation that might offer niche specific ecological fitness and explain the invasive success of P. karka in Chilika Lagoon. The draft genome sequence and annotation have been deposited at DDBJ/EMBL/GenBank under the accession number LYRP00000000. Elsevier 2016-07-19 /pmc/articles/PMC4971156/ /pubmed/27508122 http://dx.doi.org/10.1016/j.gdata.2016.07.007 Text en © 2016 Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Behera, Pratiksha Vaishampayan, Parag Singh, Nitin K. Mishra, Samir R. Raina, Vishakha Suar, Mrutyunjay Pattnaik, Ajit K. Rastogi, Gurdeep The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka |
title | The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka |
title_full | The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka |
title_fullStr | The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka |
title_full_unstemmed | The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka |
title_short | The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka |
title_sort | draft genome sequence of mangrovibacter sp. strain mp23, an endophyte isolated from the roots of phragmites karka |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971156/ https://www.ncbi.nlm.nih.gov/pubmed/27508122 http://dx.doi.org/10.1016/j.gdata.2016.07.007 |
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