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The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka

Till date, only one draft genome has been reported within the genus Mangrovibacter. Here, we report the second draft genome shotgun sequence of a Mangrovibacter sp. strain MP23 that was isolated from the roots of Phargmites karka (P. karka), an invasive weed growing in the Chilika Lagoon, Odisha, In...

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Autores principales: Behera, Pratiksha, Vaishampayan, Parag, Singh, Nitin K., Mishra, Samir R., Raina, Vishakha, Suar, Mrutyunjay, Pattnaik, Ajit K., Rastogi, Gurdeep
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971156/
https://www.ncbi.nlm.nih.gov/pubmed/27508122
http://dx.doi.org/10.1016/j.gdata.2016.07.007
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author Behera, Pratiksha
Vaishampayan, Parag
Singh, Nitin K.
Mishra, Samir R.
Raina, Vishakha
Suar, Mrutyunjay
Pattnaik, Ajit K.
Rastogi, Gurdeep
author_facet Behera, Pratiksha
Vaishampayan, Parag
Singh, Nitin K.
Mishra, Samir R.
Raina, Vishakha
Suar, Mrutyunjay
Pattnaik, Ajit K.
Rastogi, Gurdeep
author_sort Behera, Pratiksha
collection PubMed
description Till date, only one draft genome has been reported within the genus Mangrovibacter. Here, we report the second draft genome shotgun sequence of a Mangrovibacter sp. strain MP23 that was isolated from the roots of Phargmites karka (P. karka), an invasive weed growing in the Chilika Lagoon, Odisha, India. Strain MP23 is a facultative anaerobic, nitrogen-fixing endophytic bacteria that grows optimally at 37 °C, 7.0 pH, and 1% NaCl concentration. The draft genome sequence of strain MP23 contains 4,947,475 bp with an estimated G + C content of 49.9% and total 4392 protein coding genes. The genome sequence has provided information on putative genes that code for proteins involved in oxidative stress, uptake of nutrients, and nitrogen fixation that might offer niche specific ecological fitness and explain the invasive success of P. karka in Chilika Lagoon. The draft genome sequence and annotation have been deposited at DDBJ/EMBL/GenBank under the accession number LYRP00000000.
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spelling pubmed-49711562016-08-09 The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka Behera, Pratiksha Vaishampayan, Parag Singh, Nitin K. Mishra, Samir R. Raina, Vishakha Suar, Mrutyunjay Pattnaik, Ajit K. Rastogi, Gurdeep Genom Data Data in Brief Till date, only one draft genome has been reported within the genus Mangrovibacter. Here, we report the second draft genome shotgun sequence of a Mangrovibacter sp. strain MP23 that was isolated from the roots of Phargmites karka (P. karka), an invasive weed growing in the Chilika Lagoon, Odisha, India. Strain MP23 is a facultative anaerobic, nitrogen-fixing endophytic bacteria that grows optimally at 37 °C, 7.0 pH, and 1% NaCl concentration. The draft genome sequence of strain MP23 contains 4,947,475 bp with an estimated G + C content of 49.9% and total 4392 protein coding genes. The genome sequence has provided information on putative genes that code for proteins involved in oxidative stress, uptake of nutrients, and nitrogen fixation that might offer niche specific ecological fitness and explain the invasive success of P. karka in Chilika Lagoon. The draft genome sequence and annotation have been deposited at DDBJ/EMBL/GenBank under the accession number LYRP00000000. Elsevier 2016-07-19 /pmc/articles/PMC4971156/ /pubmed/27508122 http://dx.doi.org/10.1016/j.gdata.2016.07.007 Text en © 2016 Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Behera, Pratiksha
Vaishampayan, Parag
Singh, Nitin K.
Mishra, Samir R.
Raina, Vishakha
Suar, Mrutyunjay
Pattnaik, Ajit K.
Rastogi, Gurdeep
The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka
title The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka
title_full The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka
title_fullStr The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka
title_full_unstemmed The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka
title_short The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka
title_sort draft genome sequence of mangrovibacter sp. strain mp23, an endophyte isolated from the roots of phragmites karka
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971156/
https://www.ncbi.nlm.nih.gov/pubmed/27508122
http://dx.doi.org/10.1016/j.gdata.2016.07.007
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