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Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states
Altered cellular energy metabolism is a hallmark of many diseases, one notable example being cancer. Here, we focus on the identification of the transition from healthy to abnormal metabolic states. To do this, we study the dynamics of energy production in a cell. Due to the thermodynamic openness o...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971499/ https://www.ncbi.nlm.nih.gov/pubmed/27483987 http://dx.doi.org/10.1038/srep29584 |
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author | Lancaster, Gemma Suprunenko, Yevhen F. Jenkins, Kirsten Stefanovska, Aneta |
author_facet | Lancaster, Gemma Suprunenko, Yevhen F. Jenkins, Kirsten Stefanovska, Aneta |
author_sort | Lancaster, Gemma |
collection | PubMed |
description | Altered cellular energy metabolism is a hallmark of many diseases, one notable example being cancer. Here, we focus on the identification of the transition from healthy to abnormal metabolic states. To do this, we study the dynamics of energy production in a cell. Due to the thermodynamic openness of a living cell, the inability to instantaneously match fluctuating supply and demand in energy metabolism results in nonautonomous time-varying oscillatory dynamics. However, such oscillatory dynamics is often neglected and treated as stochastic. Based on experimental evidence of metabolic oscillations, we show that changes in metabolic state can be described robustly by alterations in the chronotaxicity of the corresponding metabolic oscillations, i.e. the ability of an oscillator to resist external perturbations. We also present a method for the identification of chronotaxicity, applicable to general oscillatory signals and, importantly, apply this to real experimental data. Evidence of chronotaxicity was found in glycolytic oscillations in real yeast cells, verifying that chronotaxicity could be used to study transitions between metabolic states. |
format | Online Article Text |
id | pubmed-4971499 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-49714992016-08-11 Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states Lancaster, Gemma Suprunenko, Yevhen F. Jenkins, Kirsten Stefanovska, Aneta Sci Rep Article Altered cellular energy metabolism is a hallmark of many diseases, one notable example being cancer. Here, we focus on the identification of the transition from healthy to abnormal metabolic states. To do this, we study the dynamics of energy production in a cell. Due to the thermodynamic openness of a living cell, the inability to instantaneously match fluctuating supply and demand in energy metabolism results in nonautonomous time-varying oscillatory dynamics. However, such oscillatory dynamics is often neglected and treated as stochastic. Based on experimental evidence of metabolic oscillations, we show that changes in metabolic state can be described robustly by alterations in the chronotaxicity of the corresponding metabolic oscillations, i.e. the ability of an oscillator to resist external perturbations. We also present a method for the identification of chronotaxicity, applicable to general oscillatory signals and, importantly, apply this to real experimental data. Evidence of chronotaxicity was found in glycolytic oscillations in real yeast cells, verifying that chronotaxicity could be used to study transitions between metabolic states. Nature Publishing Group 2016-08-03 /pmc/articles/PMC4971499/ /pubmed/27483987 http://dx.doi.org/10.1038/srep29584 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Lancaster, Gemma Suprunenko, Yevhen F. Jenkins, Kirsten Stefanovska, Aneta Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states |
title | Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states |
title_full | Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states |
title_fullStr | Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states |
title_full_unstemmed | Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states |
title_short | Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states |
title_sort | modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971499/ https://www.ncbi.nlm.nih.gov/pubmed/27483987 http://dx.doi.org/10.1038/srep29584 |
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