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Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states

Altered cellular energy metabolism is a hallmark of many diseases, one notable example being cancer. Here, we focus on the identification of the transition from healthy to abnormal metabolic states. To do this, we study the dynamics of energy production in a cell. Due to the thermodynamic openness o...

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Detalles Bibliográficos
Autores principales: Lancaster, Gemma, Suprunenko, Yevhen F., Jenkins, Kirsten, Stefanovska, Aneta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971499/
https://www.ncbi.nlm.nih.gov/pubmed/27483987
http://dx.doi.org/10.1038/srep29584
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author Lancaster, Gemma
Suprunenko, Yevhen F.
Jenkins, Kirsten
Stefanovska, Aneta
author_facet Lancaster, Gemma
Suprunenko, Yevhen F.
Jenkins, Kirsten
Stefanovska, Aneta
author_sort Lancaster, Gemma
collection PubMed
description Altered cellular energy metabolism is a hallmark of many diseases, one notable example being cancer. Here, we focus on the identification of the transition from healthy to abnormal metabolic states. To do this, we study the dynamics of energy production in a cell. Due to the thermodynamic openness of a living cell, the inability to instantaneously match fluctuating supply and demand in energy metabolism results in nonautonomous time-varying oscillatory dynamics. However, such oscillatory dynamics is often neglected and treated as stochastic. Based on experimental evidence of metabolic oscillations, we show that changes in metabolic state can be described robustly by alterations in the chronotaxicity of the corresponding metabolic oscillations, i.e. the ability of an oscillator to resist external perturbations. We also present a method for the identification of chronotaxicity, applicable to general oscillatory signals and, importantly, apply this to real experimental data. Evidence of chronotaxicity was found in glycolytic oscillations in real yeast cells, verifying that chronotaxicity could be used to study transitions between metabolic states.
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spelling pubmed-49714992016-08-11 Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states Lancaster, Gemma Suprunenko, Yevhen F. Jenkins, Kirsten Stefanovska, Aneta Sci Rep Article Altered cellular energy metabolism is a hallmark of many diseases, one notable example being cancer. Here, we focus on the identification of the transition from healthy to abnormal metabolic states. To do this, we study the dynamics of energy production in a cell. Due to the thermodynamic openness of a living cell, the inability to instantaneously match fluctuating supply and demand in energy metabolism results in nonautonomous time-varying oscillatory dynamics. However, such oscillatory dynamics is often neglected and treated as stochastic. Based on experimental evidence of metabolic oscillations, we show that changes in metabolic state can be described robustly by alterations in the chronotaxicity of the corresponding metabolic oscillations, i.e. the ability of an oscillator to resist external perturbations. We also present a method for the identification of chronotaxicity, applicable to general oscillatory signals and, importantly, apply this to real experimental data. Evidence of chronotaxicity was found in glycolytic oscillations in real yeast cells, verifying that chronotaxicity could be used to study transitions between metabolic states. Nature Publishing Group 2016-08-03 /pmc/articles/PMC4971499/ /pubmed/27483987 http://dx.doi.org/10.1038/srep29584 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Lancaster, Gemma
Suprunenko, Yevhen F.
Jenkins, Kirsten
Stefanovska, Aneta
Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states
title Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states
title_full Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states
title_fullStr Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states
title_full_unstemmed Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states
title_short Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states
title_sort modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971499/
https://www.ncbi.nlm.nih.gov/pubmed/27483987
http://dx.doi.org/10.1038/srep29584
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