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Generation of crystal structures using known crystal structures as analogues
This analysis attempts to answer the question of whether similar molecules crystallize in a similar manner. An analysis of structures in the Cambridge Structural Database shows that the answer is yes – sometimes they do, particularly for single-component structures. However, one does need to define...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971547/ https://www.ncbi.nlm.nih.gov/pubmed/27484374 http://dx.doi.org/10.1107/S2052520616006533 |
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author | Cole, Jason C. Groom, Colin R. Read, Murray G. Giangreco, Ilenia McCabe, Patrick Reilly, Anthony M. Shields, Gregory P. |
author_facet | Cole, Jason C. Groom, Colin R. Read, Murray G. Giangreco, Ilenia McCabe, Patrick Reilly, Anthony M. Shields, Gregory P. |
author_sort | Cole, Jason C. |
collection | PubMed |
description | This analysis attempts to answer the question of whether similar molecules crystallize in a similar manner. An analysis of structures in the Cambridge Structural Database shows that the answer is yes – sometimes they do, particularly for single-component structures. However, one does need to define what we mean by similar in both cases. Building on this observation we then demonstrate how this correlation between shape similarity and packing similarity can be used to generate potential lattices for molecules with no known crystal structure. Simple intermolecular interaction potentials can be used to minimize these potential lattices. Finally we discuss the many limitations of this approach. |
format | Online Article Text |
id | pubmed-4971547 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-49715472016-08-08 Generation of crystal structures using known crystal structures as analogues Cole, Jason C. Groom, Colin R. Read, Murray G. Giangreco, Ilenia McCabe, Patrick Reilly, Anthony M. Shields, Gregory P. Acta Crystallogr B Struct Sci Cryst Eng Mater Crystal Structure Prediction This analysis attempts to answer the question of whether similar molecules crystallize in a similar manner. An analysis of structures in the Cambridge Structural Database shows that the answer is yes – sometimes they do, particularly for single-component structures. However, one does need to define what we mean by similar in both cases. Building on this observation we then demonstrate how this correlation between shape similarity and packing similarity can be used to generate potential lattices for molecules with no known crystal structure. Simple intermolecular interaction potentials can be used to minimize these potential lattices. Finally we discuss the many limitations of this approach. International Union of Crystallography 2016-07-16 /pmc/articles/PMC4971547/ /pubmed/27484374 http://dx.doi.org/10.1107/S2052520616006533 Text en © Jason C. Cole et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Crystal Structure Prediction Cole, Jason C. Groom, Colin R. Read, Murray G. Giangreco, Ilenia McCabe, Patrick Reilly, Anthony M. Shields, Gregory P. Generation of crystal structures using known crystal structures as analogues |
title | Generation of crystal structures using known crystal structures as analogues |
title_full | Generation of crystal structures using known crystal structures as analogues |
title_fullStr | Generation of crystal structures using known crystal structures as analogues |
title_full_unstemmed | Generation of crystal structures using known crystal structures as analogues |
title_short | Generation of crystal structures using known crystal structures as analogues |
title_sort | generation of crystal structures using known crystal structures as analogues |
topic | Crystal Structure Prediction |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971547/ https://www.ncbi.nlm.nih.gov/pubmed/27484374 http://dx.doi.org/10.1107/S2052520616006533 |
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