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Generation of crystal structures using known crystal structures as analogues

This analysis attempts to answer the question of whether similar molecules crystallize in a similar manner. An analysis of structures in the Cambridge Structural Database shows that the answer is yes – sometimes they do, particularly for single-component structures. However, one does need to define...

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Autores principales: Cole, Jason C., Groom, Colin R., Read, Murray G., Giangreco, Ilenia, McCabe, Patrick, Reilly, Anthony M., Shields, Gregory P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971547/
https://www.ncbi.nlm.nih.gov/pubmed/27484374
http://dx.doi.org/10.1107/S2052520616006533
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author Cole, Jason C.
Groom, Colin R.
Read, Murray G.
Giangreco, Ilenia
McCabe, Patrick
Reilly, Anthony M.
Shields, Gregory P.
author_facet Cole, Jason C.
Groom, Colin R.
Read, Murray G.
Giangreco, Ilenia
McCabe, Patrick
Reilly, Anthony M.
Shields, Gregory P.
author_sort Cole, Jason C.
collection PubMed
description This analysis attempts to answer the question of whether similar molecules crystallize in a similar manner. An analysis of structures in the Cambridge Structural Database shows that the answer is yes – sometimes they do, particularly for single-component structures. However, one does need to define what we mean by similar in both cases. Building on this observation we then demonstrate how this correlation between shape similarity and packing similarity can be used to generate potential lattices for molecules with no known crystal structure. Simple intermolecular interaction potentials can be used to minimize these potential lattices. Finally we discuss the many limitations of this approach.
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spelling pubmed-49715472016-08-08 Generation of crystal structures using known crystal structures as analogues Cole, Jason C. Groom, Colin R. Read, Murray G. Giangreco, Ilenia McCabe, Patrick Reilly, Anthony M. Shields, Gregory P. Acta Crystallogr B Struct Sci Cryst Eng Mater Crystal Structure Prediction This analysis attempts to answer the question of whether similar molecules crystallize in a similar manner. An analysis of structures in the Cambridge Structural Database shows that the answer is yes – sometimes they do, particularly for single-component structures. However, one does need to define what we mean by similar in both cases. Building on this observation we then demonstrate how this correlation between shape similarity and packing similarity can be used to generate potential lattices for molecules with no known crystal structure. Simple intermolecular interaction potentials can be used to minimize these potential lattices. Finally we discuss the many limitations of this approach. International Union of Crystallography 2016-07-16 /pmc/articles/PMC4971547/ /pubmed/27484374 http://dx.doi.org/10.1107/S2052520616006533 Text en © Jason C. Cole et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Crystal Structure Prediction
Cole, Jason C.
Groom, Colin R.
Read, Murray G.
Giangreco, Ilenia
McCabe, Patrick
Reilly, Anthony M.
Shields, Gregory P.
Generation of crystal structures using known crystal structures as analogues
title Generation of crystal structures using known crystal structures as analogues
title_full Generation of crystal structures using known crystal structures as analogues
title_fullStr Generation of crystal structures using known crystal structures as analogues
title_full_unstemmed Generation of crystal structures using known crystal structures as analogues
title_short Generation of crystal structures using known crystal structures as analogues
title_sort generation of crystal structures using known crystal structures as analogues
topic Crystal Structure Prediction
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971547/
https://www.ncbi.nlm.nih.gov/pubmed/27484374
http://dx.doi.org/10.1107/S2052520616006533
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