Cargando…

Genome-wide characterization of non-reference transposons in crops suggests non-random insertion

BACKGROUND: Transposons (transposable elements or TEs) are DNA sequences that can change their position within the genome. A large number of TEs have been identified in reference genome of each crop(named accumulated TEs), which are the important part of genome. However, whether there existed TEs wi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wei, Bin, Liu, Hanmei, Liu, Xin, Xiao, Qianlin, Wang, Yongbin, Zhang, Junjie, Hu, Yufeng, Liu, Yinghong, Yu, Guowu, Huang, Yubi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971691/ https://www.ncbi.nlm.nih.gov/pubmed/27485608 http://dx.doi.org/10.1186/s12864-016-2847-3

Ejemplares similares

Characterization of Genome-Wide Variation in Four-Row Wax, a Waxy Maize Landrace with a Reduced Kernel Row Phenotype
por: Liu, Hanmei, et al.
Publicado: (2016)

Identification and functional analysis of the ICK gene family in maize
por: Xiao, Qianlin, et al.
Publicado: (2017)

Identification and Phylogenetic Analysis of a Novel Starch Synthase in Maize
por: Liu, Hanmei, et al.
Publicado: (2015)

Genome-wide identification of ZmSnRK2 genes and functional analysis of ZmSnRK2.10 in ABA signaling pathway in maize (Zea mays L)
por: Long, Tiandan, et al.
Publicado: (2021)

Sucrose and ABA regulate starch biosynthesis in maize through a novel transcription factor, ZmEREB156
por: Huang, Huanhuan, et al.
Publicado: (2016)

Genetic dissection of yield-related traits and mid-parent heterosis for those traits in maize (Zea mays L.)
por: Yi, Qiang, et al.
Publicado: (2019)

Loss of p53 Sensitizes Cells to Palmitic Acid-Induced Apoptosis by Reactive Oxygen Species Accumulation
por: Yu, Guowu, et al.
Publicado: (2019)

Optimization of isolation and transfection conditions of maize endosperm protoplasts
por: Hu, Yufeng, et al.
Publicado: (2020)

The Proteomic Analysis of Maize Endosperm Protein Enriched by Phos-tag(tm) Reveals the Phosphorylation of Brittle-2 Subunit of ADP-Glc Pyrophosphorylase in Starch Biosynthesis Process
por: Yu, Guowu, et al.
Publicado: (2019)

Identification of Transcription Factors ZmMYB111 and ZmMYB148 Involved in Phenylpropanoid Metabolism
por: Zhang, Junjie, et al.
Publicado: (2016)

Genetic Analysis in Maize Foundation Parents with Mapping Population and Testcross Population: Ye478 Carried More Favorable Alleles and Using QTL Information Could Improve Foundation Parents
por: Liu, Yinghong, et al.
Publicado: (2016)

Gibberellin induced transcription factor bZIP53 regulates CesA1 expression in maize kernels
por: Lv, Huayang, et al.
Publicado: (2021)

Comparative Study of Starch Phosphorylase Genes and Encoded Proteins in Various Monocots and Dicots with Emphasis on Maize
por: Yu, Guowu, et al.
Publicado: (2022)

Identification of Morphogenesis-Related NDR Kinase Signaling Network and Its Regulation on Cold Tolerance in Maize
por: Tian, Ran, et al.
Publicado: (2023)

Pleiotropic ZmICE1 Is an Important Transcriptional Regulator of Maize Endosperm Starch Biosynthesis
por: Liu, Hanmei, et al.
Publicado: (2022)

Epi-Brassinolide Regulates ZmC4 NADP-ME Expression through the Transcription Factors ZmbHLH157 and ZmNF-YC2
por: Gao, Yuanfen, et al.
Publicado: (2023)

The novel ZmTCP7 transcription factor targets AGPase-encoding gene ZmBt2 to regulate storage starch accumulation in maize
por: Ajayo, Babatope Samuel, et al.
Publicado: (2022)

Maize brachytic2 (br2) suppresses the elongation of lower internodes for excessive auxin accumulation in the intercalary meristem region
por: Zhang, Xiangge, et al.
Publicado: (2019)

Transposon insertional mutagenesis of diverse yeast strains suggests coordinated gene essentiality polymorphisms
por: Chen, Piaopiao, et al.
Publicado: (2022)

Time-Resolved Transposon Insertion Sequencing Reveals Genome-Wide Fitness Dynamics during Infection
por: Yang, Guanhua, et al.
Publicado: (2017)

A benchmark and an algorithm for detecting germline transposon insertions and measuring de novo transposon insertion frequencies
por: Yu, Tianxiong, et al.
Publicado: (2021)

Structural and genome-wide analyses suggest that transposon-derived protein SETMAR alters transcription and splicing
por: Chen, Qiujia, et al.
Publicado: (2022)

Serine 31 Phosphorylation-Driven Regulation of AGPase Activity: Potential Implications for Enhanced Starch Yields in Crops
por: Yu, Guowu, et al.
Publicado: (2023)

ARTIST: High-Resolution Genome-Wide Assessment of Fitness Using Transposon-Insertion Sequencing
por: Pritchard, Justin R., et al.
Publicado: (2014)

The Nucleoid Binding Protein H-NS Biases Genome-Wide Transposon Insertion Landscapes
por: Kimura, Satoshi, et al.
Publicado: (2016)

Genome-Wide Determination of Gene Essentiality by Transposon Insertion Sequencing in Yeast Pichia pastoris
por: Zhu, Jinxiang, et al.
Publicado: (2018)

Expedited batch processing and analysis of transposon insertions
por: Smith, Jeremy D, et al.
Publicado: (2011)

A decade of advances in transposon-insertion sequencing
por: Cain, Amy K., et al.
Publicado: (2020)

Application of Transposon Insertion Sequencing to Agricultural Science
por: Fabian, Belinda K., et al.
Publicado: (2020)

Transposon insertion mapping with PIMMS – Pragmatic Insertional Mutation Mapping System
por: Blanchard, Adam M., et al.
Publicado: (2015)

Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility
por: Vrljicak, Pavle, et al.
Publicado: (2016)

RTRIP: a comprehensive profile of transposon insertion polymorphisms in rice
por: Liu, Zhen, et al.
Publicado: (2020)

Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells
por: McKerrow, Wilson, et al.
Publicado: (2020)

Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize
por: Lai, Xianjun, et al.
Publicado: (2017)

A Genome-Wide Collection of Mos1 Transposon Insertion Mutants for the C. elegans Research Community
por: Vallin, Elodie, et al.
Publicado: (2012)

Shotgun Cloning of Transposon Insertions in the Genome of Caenorhabditis elegans
por: van der Linden, Alexander M., et al.
Publicado: (2004)

Approaches to querying bacterial genomes with transposon-insertion sequencing
por: Barquist, Lars, et al.
Publicado: (2013)

Random transposon insertion in the Mycoplasma hominis minimal genome
por: Rideau, Fabien, et al.
Publicado: (2019)

Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder
por: Borges-Monroy, Rebeca, et al.
Publicado: (2021)

Transposon age and non-CG methylation
por: Wang, Zhengming, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_a3e62j201gl60gafaqhhbjnqon