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Architecture and evolution of a minute plant genome
It has been argued that the evolution of plant genome size is principally unidirectional and increasing owing to the varied action of whole-genome duplications (WGDs) and mobile element proliferation(1). However, extreme genome size reductions have been reported in the angiosperm family tree. Here w...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4972453/ https://www.ncbi.nlm.nih.gov/pubmed/23665961 http://dx.doi.org/10.1038/nature12132 |
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author | Ibarra-Laclette, Enrique Lyons, Eric Hernández-Guzmán, Gustavo Pérez-Torres, Claudia Anahí Carretero-Paulet, Lorenzo Chang, Tien-Hao Lan, Tianying Welch, Andreanna J. Juárez, María Jazmín Abraham Simpson, June Fernández-Cortés, Araceli Arteaga-Vázquez, Mario Góngora-Castillo, Elsa Acevedo-Hernández, Gustavo Schuster, Stephan C. Himmelbauer, Heinz Minoche, André E. Xu, Sen Lynch, Michael Oropeza-Aburto, Araceli Cervantes-Pérez, Sergio Alan de Jesús Ortega-Estrada, María Cervantes-Luevano, Jacob Israel Michael, Todd P. Mockler, Todd Bryant, Douglas Herrera-Estrella, Alfredo Albert, Victor A. Herrera-Estrella, Luis |
author_facet | Ibarra-Laclette, Enrique Lyons, Eric Hernández-Guzmán, Gustavo Pérez-Torres, Claudia Anahí Carretero-Paulet, Lorenzo Chang, Tien-Hao Lan, Tianying Welch, Andreanna J. Juárez, María Jazmín Abraham Simpson, June Fernández-Cortés, Araceli Arteaga-Vázquez, Mario Góngora-Castillo, Elsa Acevedo-Hernández, Gustavo Schuster, Stephan C. Himmelbauer, Heinz Minoche, André E. Xu, Sen Lynch, Michael Oropeza-Aburto, Araceli Cervantes-Pérez, Sergio Alan de Jesús Ortega-Estrada, María Cervantes-Luevano, Jacob Israel Michael, Todd P. Mockler, Todd Bryant, Douglas Herrera-Estrella, Alfredo Albert, Victor A. Herrera-Estrella, Luis |
author_sort | Ibarra-Laclette, Enrique |
collection | PubMed |
description | It has been argued that the evolution of plant genome size is principally unidirectional and increasing owing to the varied action of whole-genome duplications (WGDs) and mobile element proliferation(1). However, extreme genome size reductions have been reported in the angiosperm family tree. Here we report the sequence of the 82-megabase genome of the carnivorous bladderwort plant Utricularia gibba. Despite its tiny size, the U. gibba genome accommodates a typical number of genes for a plant, with the main difference from other plant genomes arising from a drastic reduction in non-genic DNA. Unexpectedly, we identified at least three rounds of WGD in U. gibba since common ancestry with tomato (Solanum) and grape (Vitis). The compressed architecture of the U. gibba genome indicates that a small fraction of intergenic DNA, with few or no active retrotransposons, is sufficient to regulate and integrate all the processes required for the development and reproduction of a complex organism. |
format | Online Article Text |
id | pubmed-4972453 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
record_format | MEDLINE/PubMed |
spelling | pubmed-49724532016-08-03 Architecture and evolution of a minute plant genome Ibarra-Laclette, Enrique Lyons, Eric Hernández-Guzmán, Gustavo Pérez-Torres, Claudia Anahí Carretero-Paulet, Lorenzo Chang, Tien-Hao Lan, Tianying Welch, Andreanna J. Juárez, María Jazmín Abraham Simpson, June Fernández-Cortés, Araceli Arteaga-Vázquez, Mario Góngora-Castillo, Elsa Acevedo-Hernández, Gustavo Schuster, Stephan C. Himmelbauer, Heinz Minoche, André E. Xu, Sen Lynch, Michael Oropeza-Aburto, Araceli Cervantes-Pérez, Sergio Alan de Jesús Ortega-Estrada, María Cervantes-Luevano, Jacob Israel Michael, Todd P. Mockler, Todd Bryant, Douglas Herrera-Estrella, Alfredo Albert, Victor A. Herrera-Estrella, Luis Nature Article It has been argued that the evolution of plant genome size is principally unidirectional and increasing owing to the varied action of whole-genome duplications (WGDs) and mobile element proliferation(1). However, extreme genome size reductions have been reported in the angiosperm family tree. Here we report the sequence of the 82-megabase genome of the carnivorous bladderwort plant Utricularia gibba. Despite its tiny size, the U. gibba genome accommodates a typical number of genes for a plant, with the main difference from other plant genomes arising from a drastic reduction in non-genic DNA. Unexpectedly, we identified at least three rounds of WGD in U. gibba since common ancestry with tomato (Solanum) and grape (Vitis). The compressed architecture of the U. gibba genome indicates that a small fraction of intergenic DNA, with few or no active retrotransposons, is sufficient to regulate and integrate all the processes required for the development and reproduction of a complex organism. 2013-05-12 2013-06-06 /pmc/articles/PMC4972453/ /pubmed/23665961 http://dx.doi.org/10.1038/nature12132 Text en Reprints and permissions information is available at www.nature.com/reprints. This paper is distributed under the terms of the Creative Commons Attribution-Non-Commercial-Share Alike licence, and is freely available to all readers at www.nature.com/nature. This work is licensed under a Creative Commons Attribution-NonCommercial-Share Alike 3.0 Unported licence. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-sa/3.0 |
spellingShingle | Article Ibarra-Laclette, Enrique Lyons, Eric Hernández-Guzmán, Gustavo Pérez-Torres, Claudia Anahí Carretero-Paulet, Lorenzo Chang, Tien-Hao Lan, Tianying Welch, Andreanna J. Juárez, María Jazmín Abraham Simpson, June Fernández-Cortés, Araceli Arteaga-Vázquez, Mario Góngora-Castillo, Elsa Acevedo-Hernández, Gustavo Schuster, Stephan C. Himmelbauer, Heinz Minoche, André E. Xu, Sen Lynch, Michael Oropeza-Aburto, Araceli Cervantes-Pérez, Sergio Alan de Jesús Ortega-Estrada, María Cervantes-Luevano, Jacob Israel Michael, Todd P. Mockler, Todd Bryant, Douglas Herrera-Estrella, Alfredo Albert, Victor A. Herrera-Estrella, Luis Architecture and evolution of a minute plant genome |
title | Architecture and evolution of a minute plant genome |
title_full | Architecture and evolution of a minute plant genome |
title_fullStr | Architecture and evolution of a minute plant genome |
title_full_unstemmed | Architecture and evolution of a minute plant genome |
title_short | Architecture and evolution of a minute plant genome |
title_sort | architecture and evolution of a minute plant genome |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4972453/ https://www.ncbi.nlm.nih.gov/pubmed/23665961 http://dx.doi.org/10.1038/nature12132 |
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