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Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination

Alishewanella sp. WH16-1 (= CCTCC M201507) is a facultative anaerobic, motile, Gram-negative, rod-shaped bacterium isolated from soil of a copper and iron mine. This strain efficiently reduces chromate (Cr(6+)) to the much less toxic Cr(3+). In addition, it reduces sulfate (SO(4)(2−)) to S(2−). The...

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Autores principales: Xia, Xian, Li, Jiahong, Liao, Shuijiao, Zhou, Gaoting, Wang, Hui, Li, Liqiong, Xu, Biao, Wang, Gejiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974768/
https://www.ncbi.nlm.nih.gov/pubmed/27499827
http://dx.doi.org/10.1186/s40793-016-0169-3
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author Xia, Xian
Li, Jiahong
Liao, Shuijiao
Zhou, Gaoting
Wang, Hui
Li, Liqiong
Xu, Biao
Wang, Gejiao
author_facet Xia, Xian
Li, Jiahong
Liao, Shuijiao
Zhou, Gaoting
Wang, Hui
Li, Liqiong
Xu, Biao
Wang, Gejiao
author_sort Xia, Xian
collection PubMed
description Alishewanella sp. WH16-1 (= CCTCC M201507) is a facultative anaerobic, motile, Gram-negative, rod-shaped bacterium isolated from soil of a copper and iron mine. This strain efficiently reduces chromate (Cr(6+)) to the much less toxic Cr(3+). In addition, it reduces sulfate (SO(4)(2−)) to S(2−). The S(2−) could react with Cd(2+) to generate precipitated CdS. Thus, strain WH16-1 shows a great potential to bioremediate Cr and Cd contaimination. Here we describe the features of this organism, together with the draft genome and comparative genomic results among strain WH16-1 and other Alishewanella strains. The genome comprises 3,488,867 bp, 50.4 % G + C content, 3,132 protein-coding genes and 80 RNA genes. Both putative chromate- and sulfate-reducing genes are identified. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0169-3) contains supplementary material, which is available to authorized users.
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spelling pubmed-49747682016-08-06 Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination Xia, Xian Li, Jiahong Liao, Shuijiao Zhou, Gaoting Wang, Hui Li, Liqiong Xu, Biao Wang, Gejiao Stand Genomic Sci Short Genome Report Alishewanella sp. WH16-1 (= CCTCC M201507) is a facultative anaerobic, motile, Gram-negative, rod-shaped bacterium isolated from soil of a copper and iron mine. This strain efficiently reduces chromate (Cr(6+)) to the much less toxic Cr(3+). In addition, it reduces sulfate (SO(4)(2−)) to S(2−). The S(2−) could react with Cd(2+) to generate precipitated CdS. Thus, strain WH16-1 shows a great potential to bioremediate Cr and Cd contaimination. Here we describe the features of this organism, together with the draft genome and comparative genomic results among strain WH16-1 and other Alishewanella strains. The genome comprises 3,488,867 bp, 50.4 % G + C content, 3,132 protein-coding genes and 80 RNA genes. Both putative chromate- and sulfate-reducing genes are identified. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0169-3) contains supplementary material, which is available to authorized users. BioMed Central 2016-08-05 /pmc/articles/PMC4974768/ /pubmed/27499827 http://dx.doi.org/10.1186/s40793-016-0169-3 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Xia, Xian
Li, Jiahong
Liao, Shuijiao
Zhou, Gaoting
Wang, Hui
Li, Liqiong
Xu, Biao
Wang, Gejiao
Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination
title Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination
title_full Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination
title_fullStr Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination
title_full_unstemmed Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination
title_short Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination
title_sort draft genomic sequence of a chromate- and sulfate-reducing alishewanella strain with the ability to bioremediate cr and cd contamination
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974768/
https://www.ncbi.nlm.nih.gov/pubmed/27499827
http://dx.doi.org/10.1186/s40793-016-0169-3
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