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Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks

A major limitation with traditional phage preparations is the variability in titer, salts, and bacterial contaminants between successive propagations. Here we introduce the Phage On Tap (PoT) protocol for the quick and efficient preparation of homogenous bacteriophage (phage) stocks. This method pro...

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Autores principales: Bonilla, Natasha, Rojas, Maria Isabel, Netto Flores Cruz, Giuliano, Hung, Shr-Hau, Rohwer, Forest, Barr, Jeremy J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4975003/
https://www.ncbi.nlm.nih.gov/pubmed/27547567
http://dx.doi.org/10.7717/peerj.2261
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author Bonilla, Natasha
Rojas, Maria Isabel
Netto Flores Cruz, Giuliano
Hung, Shr-Hau
Rohwer, Forest
Barr, Jeremy J.
author_facet Bonilla, Natasha
Rojas, Maria Isabel
Netto Flores Cruz, Giuliano
Hung, Shr-Hau
Rohwer, Forest
Barr, Jeremy J.
author_sort Bonilla, Natasha
collection PubMed
description A major limitation with traditional phage preparations is the variability in titer, salts, and bacterial contaminants between successive propagations. Here we introduce the Phage On Tap (PoT) protocol for the quick and efficient preparation of homogenous bacteriophage (phage) stocks. This method produces homogenous, laboratory-scale, high titer (up to 10(10–11) PFU·ml(−1)), endotoxin reduced phage banks that can be used to eliminate the variability between phage propagations and improve the molecular characterizations of phage. The method consists of five major parts, including phage propagation, phage clean up by 0.22 μm filtering and chloroform treatment, phage concentration by ultrafiltration, endotoxin removal, and the preparation and storage of phage banks for continuous laboratory use. From a starting liquid lysate of > 100 mL, the PoT protocol generated a clean, homogenous, laboratory phage bank with a phage recovery efficiency of 85% within just two days. In contrast, the traditional method took upwards of five days to produce a high titer, but lower volume phage stock with a recovery efficiency of only 4%. Phage banks can be further purified for the removal of bacterial endotoxins, reducing endotoxin concentrations by over 3,000-fold while maintaining phage titer. The PoT protocol focused on T-like phages, but is broadly applicable to a variety of phages that can be propagated to sufficient titer, producing homogenous, high titer phage banks that are applicable for molecular and cellular assays.
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spelling pubmed-49750032016-08-19 Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks Bonilla, Natasha Rojas, Maria Isabel Netto Flores Cruz, Giuliano Hung, Shr-Hau Rohwer, Forest Barr, Jeremy J. PeerJ Microbiology A major limitation with traditional phage preparations is the variability in titer, salts, and bacterial contaminants between successive propagations. Here we introduce the Phage On Tap (PoT) protocol for the quick and efficient preparation of homogenous bacteriophage (phage) stocks. This method produces homogenous, laboratory-scale, high titer (up to 10(10–11) PFU·ml(−1)), endotoxin reduced phage banks that can be used to eliminate the variability between phage propagations and improve the molecular characterizations of phage. The method consists of five major parts, including phage propagation, phage clean up by 0.22 μm filtering and chloroform treatment, phage concentration by ultrafiltration, endotoxin removal, and the preparation and storage of phage banks for continuous laboratory use. From a starting liquid lysate of > 100 mL, the PoT protocol generated a clean, homogenous, laboratory phage bank with a phage recovery efficiency of 85% within just two days. In contrast, the traditional method took upwards of five days to produce a high titer, but lower volume phage stock with a recovery efficiency of only 4%. Phage banks can be further purified for the removal of bacterial endotoxins, reducing endotoxin concentrations by over 3,000-fold while maintaining phage titer. The PoT protocol focused on T-like phages, but is broadly applicable to a variety of phages that can be propagated to sufficient titer, producing homogenous, high titer phage banks that are applicable for molecular and cellular assays. PeerJ Inc. 2016-07-26 /pmc/articles/PMC4975003/ /pubmed/27547567 http://dx.doi.org/10.7717/peerj.2261 Text en © 2016 Bonilla et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Microbiology
Bonilla, Natasha
Rojas, Maria Isabel
Netto Flores Cruz, Giuliano
Hung, Shr-Hau
Rohwer, Forest
Barr, Jeremy J.
Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks
title Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks
title_full Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks
title_fullStr Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks
title_full_unstemmed Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks
title_short Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks
title_sort phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4975003/
https://www.ncbi.nlm.nih.gov/pubmed/27547567
http://dx.doi.org/10.7717/peerj.2261
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