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Flow-Based Network Analysis of the Caenorhabditis elegans Connectome

We exploit flow propagation on the directed neuronal network of the nematode C. elegans to reveal dynamically relevant features of its connectome. We find flow-based groupings of neurons at different levels of granularity, which we relate to functional and anatomical constituents of its nervous syst...

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Autores principales: Bacik, Karol A., Schaub, Michael T., Beguerisse-Díaz, Mariano, Billeh, Yazan N., Barahona, Mauricio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4975510/
https://www.ncbi.nlm.nih.gov/pubmed/27494178
http://dx.doi.org/10.1371/journal.pcbi.1005055
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author Bacik, Karol A.
Schaub, Michael T.
Beguerisse-Díaz, Mariano
Billeh, Yazan N.
Barahona, Mauricio
author_facet Bacik, Karol A.
Schaub, Michael T.
Beguerisse-Díaz, Mariano
Billeh, Yazan N.
Barahona, Mauricio
author_sort Bacik, Karol A.
collection PubMed
description We exploit flow propagation on the directed neuronal network of the nematode C. elegans to reveal dynamically relevant features of its connectome. We find flow-based groupings of neurons at different levels of granularity, which we relate to functional and anatomical constituents of its nervous system. A systematic in silico evaluation of the full set of single and double neuron ablations is used to identify deletions that induce the most severe disruptions of the multi-resolution flow structure. Such ablations are linked to functionally relevant neurons, and suggest potential candidates for further in vivo investigation. In addition, we use the directional patterns of incoming and outgoing network flows at all scales to identify flow profiles for the neurons in the connectome, without pre-imposing a priori categories. The four flow roles identified are linked to signal propagation motivated by biological input-response scenarios.
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spelling pubmed-49755102016-08-25 Flow-Based Network Analysis of the Caenorhabditis elegans Connectome Bacik, Karol A. Schaub, Michael T. Beguerisse-Díaz, Mariano Billeh, Yazan N. Barahona, Mauricio PLoS Comput Biol Research Article We exploit flow propagation on the directed neuronal network of the nematode C. elegans to reveal dynamically relevant features of its connectome. We find flow-based groupings of neurons at different levels of granularity, which we relate to functional and anatomical constituents of its nervous system. A systematic in silico evaluation of the full set of single and double neuron ablations is used to identify deletions that induce the most severe disruptions of the multi-resolution flow structure. Such ablations are linked to functionally relevant neurons, and suggest potential candidates for further in vivo investigation. In addition, we use the directional patterns of incoming and outgoing network flows at all scales to identify flow profiles for the neurons in the connectome, without pre-imposing a priori categories. The four flow roles identified are linked to signal propagation motivated by biological input-response scenarios. Public Library of Science 2016-08-05 /pmc/articles/PMC4975510/ /pubmed/27494178 http://dx.doi.org/10.1371/journal.pcbi.1005055 Text en © 2016 Bacik et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Bacik, Karol A.
Schaub, Michael T.
Beguerisse-Díaz, Mariano
Billeh, Yazan N.
Barahona, Mauricio
Flow-Based Network Analysis of the Caenorhabditis elegans Connectome
title Flow-Based Network Analysis of the Caenorhabditis elegans Connectome
title_full Flow-Based Network Analysis of the Caenorhabditis elegans Connectome
title_fullStr Flow-Based Network Analysis of the Caenorhabditis elegans Connectome
title_full_unstemmed Flow-Based Network Analysis of the Caenorhabditis elegans Connectome
title_short Flow-Based Network Analysis of the Caenorhabditis elegans Connectome
title_sort flow-based network analysis of the caenorhabditis elegans connectome
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4975510/
https://www.ncbi.nlm.nih.gov/pubmed/27494178
http://dx.doi.org/10.1371/journal.pcbi.1005055
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