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Flow-Based Network Analysis of the Caenorhabditis elegans Connectome
We exploit flow propagation on the directed neuronal network of the nematode C. elegans to reveal dynamically relevant features of its connectome. We find flow-based groupings of neurons at different levels of granularity, which we relate to functional and anatomical constituents of its nervous syst...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4975510/ https://www.ncbi.nlm.nih.gov/pubmed/27494178 http://dx.doi.org/10.1371/journal.pcbi.1005055 |
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author | Bacik, Karol A. Schaub, Michael T. Beguerisse-Díaz, Mariano Billeh, Yazan N. Barahona, Mauricio |
author_facet | Bacik, Karol A. Schaub, Michael T. Beguerisse-Díaz, Mariano Billeh, Yazan N. Barahona, Mauricio |
author_sort | Bacik, Karol A. |
collection | PubMed |
description | We exploit flow propagation on the directed neuronal network of the nematode C. elegans to reveal dynamically relevant features of its connectome. We find flow-based groupings of neurons at different levels of granularity, which we relate to functional and anatomical constituents of its nervous system. A systematic in silico evaluation of the full set of single and double neuron ablations is used to identify deletions that induce the most severe disruptions of the multi-resolution flow structure. Such ablations are linked to functionally relevant neurons, and suggest potential candidates for further in vivo investigation. In addition, we use the directional patterns of incoming and outgoing network flows at all scales to identify flow profiles for the neurons in the connectome, without pre-imposing a priori categories. The four flow roles identified are linked to signal propagation motivated by biological input-response scenarios. |
format | Online Article Text |
id | pubmed-4975510 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-49755102016-08-25 Flow-Based Network Analysis of the Caenorhabditis elegans Connectome Bacik, Karol A. Schaub, Michael T. Beguerisse-Díaz, Mariano Billeh, Yazan N. Barahona, Mauricio PLoS Comput Biol Research Article We exploit flow propagation on the directed neuronal network of the nematode C. elegans to reveal dynamically relevant features of its connectome. We find flow-based groupings of neurons at different levels of granularity, which we relate to functional and anatomical constituents of its nervous system. A systematic in silico evaluation of the full set of single and double neuron ablations is used to identify deletions that induce the most severe disruptions of the multi-resolution flow structure. Such ablations are linked to functionally relevant neurons, and suggest potential candidates for further in vivo investigation. In addition, we use the directional patterns of incoming and outgoing network flows at all scales to identify flow profiles for the neurons in the connectome, without pre-imposing a priori categories. The four flow roles identified are linked to signal propagation motivated by biological input-response scenarios. Public Library of Science 2016-08-05 /pmc/articles/PMC4975510/ /pubmed/27494178 http://dx.doi.org/10.1371/journal.pcbi.1005055 Text en © 2016 Bacik et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Bacik, Karol A. Schaub, Michael T. Beguerisse-Díaz, Mariano Billeh, Yazan N. Barahona, Mauricio Flow-Based Network Analysis of the Caenorhabditis elegans Connectome |
title | Flow-Based Network Analysis of the Caenorhabditis elegans Connectome |
title_full | Flow-Based Network Analysis of the Caenorhabditis elegans Connectome |
title_fullStr | Flow-Based Network Analysis of the Caenorhabditis elegans Connectome |
title_full_unstemmed | Flow-Based Network Analysis of the Caenorhabditis elegans Connectome |
title_short | Flow-Based Network Analysis of the Caenorhabditis elegans Connectome |
title_sort | flow-based network analysis of the caenorhabditis elegans connectome |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4975510/ https://www.ncbi.nlm.nih.gov/pubmed/27494178 http://dx.doi.org/10.1371/journal.pcbi.1005055 |
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