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Differential repetitive DNA composition in the centromeric region of chromosomes of Amazonian lizard species in the family Teiidae

Abstract. Differences in heterochromatin distribution patterns and its composition were observed in Amazonian teiid species. Studies have shown repetitive DNA harbors heterochromatic blocks which are located in centromeric and telomeric regions in Ameiva ameiva (Linnaeus, 1758), Kentropyx calcarata...

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Autores principales: Carvalho, Natalia D. M., Carmo, Edson, Neves, Rogerio O., Schneider, Carlos Henrique, Gross, Maria Claudia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4977797/
https://www.ncbi.nlm.nih.gov/pubmed/27551343
http://dx.doi.org/10.3897/CompCytogen.v10i2.7081
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author Carvalho, Natalia D. M.
Carmo, Edson
Neves, Rogerio O.
Schneider, Carlos Henrique
Gross, Maria Claudia
author_facet Carvalho, Natalia D. M.
Carmo, Edson
Neves, Rogerio O.
Schneider, Carlos Henrique
Gross, Maria Claudia
author_sort Carvalho, Natalia D. M.
collection PubMed
description Abstract. Differences in heterochromatin distribution patterns and its composition were observed in Amazonian teiid species. Studies have shown repetitive DNA harbors heterochromatic blocks which are located in centromeric and telomeric regions in Ameiva ameiva (Linnaeus, 1758), Kentropyx calcarata (Spix, 1825), Kentropyx pelviceps (Cope, 1868), and Tupinambis teguixin (Linnaeus, 1758). In Cnemidophorus sp.1, repetitive DNA has multiple signals along all chromosomes. The aim of this study was to characterize moderately and highly repetitive DNA sequences by C(o)t1-DNA from Ameiva ameiva and Cnemidophorus sp.1 genomes through cloning and DNA sequencing, as well as mapping them chromosomally to better understand its organization and genome dynamics. The results of sequencing of DNA libraries obtained by C(o)t1-DNA showed that different microsatellites, transposons, retrotransposons, and some gene families also comprise the fraction of repetitive DNA in the teiid species. FISH using C(o)t1-DNA probes isolated from both Ameiva ameiva and Cnemidophorus sp.1 showed these sequences mainly located in heterochromatic centromeric, and telomeric regions in Ameiva ameiva, Kentropyx calcarata, Kentropyx pelviceps, and Tupinambis teguixin chromosomes, indicating they play structural and functional roles in the genome of these species. In Cnemidophorus sp.1, C(o)t1-DNA probe isolated from Ameiva ameiva had multiple interstitial signals on chromosomes, whereas mapping of C(o)t1-DNA isolated from the Ameiva ameiva and Cnemidophorus sp.1 highlighted centromeric regions of some chromosomes. Thus, the data obtained showed that many repetitive DNA classes are part of the genome of Ameiva ameiva, Cnemidophorus sp.1, Kentroyx calcarata, Kentropyx pelviceps, and Tupinambis teguixin, and these sequences are shared among the analyzed teiid species, but they were not always allocated at the same chromosome position.
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spelling pubmed-49777972016-08-22 Differential repetitive DNA composition in the centromeric region of chromosomes of Amazonian lizard species in the family Teiidae Carvalho, Natalia D. M. Carmo, Edson Neves, Rogerio O. Schneider, Carlos Henrique Gross, Maria Claudia Comp Cytogenet Research Articles Abstract. Differences in heterochromatin distribution patterns and its composition were observed in Amazonian teiid species. Studies have shown repetitive DNA harbors heterochromatic blocks which are located in centromeric and telomeric regions in Ameiva ameiva (Linnaeus, 1758), Kentropyx calcarata (Spix, 1825), Kentropyx pelviceps (Cope, 1868), and Tupinambis teguixin (Linnaeus, 1758). In Cnemidophorus sp.1, repetitive DNA has multiple signals along all chromosomes. The aim of this study was to characterize moderately and highly repetitive DNA sequences by C(o)t1-DNA from Ameiva ameiva and Cnemidophorus sp.1 genomes through cloning and DNA sequencing, as well as mapping them chromosomally to better understand its organization and genome dynamics. The results of sequencing of DNA libraries obtained by C(o)t1-DNA showed that different microsatellites, transposons, retrotransposons, and some gene families also comprise the fraction of repetitive DNA in the teiid species. FISH using C(o)t1-DNA probes isolated from both Ameiva ameiva and Cnemidophorus sp.1 showed these sequences mainly located in heterochromatic centromeric, and telomeric regions in Ameiva ameiva, Kentropyx calcarata, Kentropyx pelviceps, and Tupinambis teguixin chromosomes, indicating they play structural and functional roles in the genome of these species. In Cnemidophorus sp.1, C(o)t1-DNA probe isolated from Ameiva ameiva had multiple interstitial signals on chromosomes, whereas mapping of C(o)t1-DNA isolated from the Ameiva ameiva and Cnemidophorus sp.1 highlighted centromeric regions of some chromosomes. Thus, the data obtained showed that many repetitive DNA classes are part of the genome of Ameiva ameiva, Cnemidophorus sp.1, Kentroyx calcarata, Kentropyx pelviceps, and Tupinambis teguixin, and these sequences are shared among the analyzed teiid species, but they were not always allocated at the same chromosome position. Pensoft Publishers 2016-04-06 /pmc/articles/PMC4977797/ /pubmed/27551343 http://dx.doi.org/10.3897/CompCytogen.v10i2.7081 Text en Natalia D. M. Carvalho, Edson Carmo, Rogerio O. Neves, Carlos Henrique Schneider, Maria Claudia Gross http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Articles
Carvalho, Natalia D. M.
Carmo, Edson
Neves, Rogerio O.
Schneider, Carlos Henrique
Gross, Maria Claudia
Differential repetitive DNA composition in the centromeric region of chromosomes of Amazonian lizard species in the family Teiidae
title Differential repetitive DNA composition in the centromeric region of chromosomes of Amazonian lizard species in the family Teiidae
title_full Differential repetitive DNA composition in the centromeric region of chromosomes of Amazonian lizard species in the family Teiidae
title_fullStr Differential repetitive DNA composition in the centromeric region of chromosomes of Amazonian lizard species in the family Teiidae
title_full_unstemmed Differential repetitive DNA composition in the centromeric region of chromosomes of Amazonian lizard species in the family Teiidae
title_short Differential repetitive DNA composition in the centromeric region of chromosomes of Amazonian lizard species in the family Teiidae
title_sort differential repetitive dna composition in the centromeric region of chromosomes of amazonian lizard species in the family teiidae
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4977797/
https://www.ncbi.nlm.nih.gov/pubmed/27551343
http://dx.doi.org/10.3897/CompCytogen.v10i2.7081
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