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General Force-Field Parametrization Scheme for Molecular Dynamics Simulations of Conjugated Materials in Solution
[Image: see text] We describe a general scheme to obtain force-field parameters for classical molecular dynamics simulations of conjugated polymers. We identify a computationally inexpensive methodology for calculation of accurate intermonomer dihedral potentials and partial charges. Our findings in...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4980687/ https://www.ncbi.nlm.nih.gov/pubmed/27397762 http://dx.doi.org/10.1021/acs.jctc.5b01195 |
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author | Wildman, Jack Repiščák, Peter Paterson, Martin J. Galbraith, Ian |
author_facet | Wildman, Jack Repiščák, Peter Paterson, Martin J. Galbraith, Ian |
author_sort | Wildman, Jack |
collection | PubMed |
description | [Image: see text] We describe a general scheme to obtain force-field parameters for classical molecular dynamics simulations of conjugated polymers. We identify a computationally inexpensive methodology for calculation of accurate intermonomer dihedral potentials and partial charges. Our findings indicate that the use of a two-step methodology of geometry optimization and single-point energy calculations using DFT methods produces potentials which compare favorably to high level theory calculation. We also report the effects of varying the conjugated backbone length and alkyl side-chain lengths on the dihedral profiles and partial charge distributions and determine the existence of converged lengths above which convergence is achieved in the force-field parameter sets. We thus determine which calculations are required for accurate parametrization and the scope of a given parameter set for variations to a given molecule. We perform simulations of long oligomers of dioctylfluorene and hexylthiophene in explicit solvent and find peristence lengths and end-length distributions consistent with experimental values. |
format | Online Article Text |
id | pubmed-4980687 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-49806872016-08-17 General Force-Field Parametrization Scheme for Molecular Dynamics Simulations of Conjugated Materials in Solution Wildman, Jack Repiščák, Peter Paterson, Martin J. Galbraith, Ian J Chem Theory Comput [Image: see text] We describe a general scheme to obtain force-field parameters for classical molecular dynamics simulations of conjugated polymers. We identify a computationally inexpensive methodology for calculation of accurate intermonomer dihedral potentials and partial charges. Our findings indicate that the use of a two-step methodology of geometry optimization and single-point energy calculations using DFT methods produces potentials which compare favorably to high level theory calculation. We also report the effects of varying the conjugated backbone length and alkyl side-chain lengths on the dihedral profiles and partial charge distributions and determine the existence of converged lengths above which convergence is achieved in the force-field parameter sets. We thus determine which calculations are required for accurate parametrization and the scope of a given parameter set for variations to a given molecule. We perform simulations of long oligomers of dioctylfluorene and hexylthiophene in explicit solvent and find peristence lengths and end-length distributions consistent with experimental values. American Chemical Society 2016-07-10 2016-08-09 /pmc/articles/PMC4980687/ /pubmed/27397762 http://dx.doi.org/10.1021/acs.jctc.5b01195 Text en Copyright © 2016 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Wildman, Jack Repiščák, Peter Paterson, Martin J. Galbraith, Ian General Force-Field Parametrization Scheme for Molecular Dynamics Simulations of Conjugated Materials in Solution |
title | General Force-Field Parametrization Scheme for Molecular
Dynamics Simulations of Conjugated Materials in Solution |
title_full | General Force-Field Parametrization Scheme for Molecular
Dynamics Simulations of Conjugated Materials in Solution |
title_fullStr | General Force-Field Parametrization Scheme for Molecular
Dynamics Simulations of Conjugated Materials in Solution |
title_full_unstemmed | General Force-Field Parametrization Scheme for Molecular
Dynamics Simulations of Conjugated Materials in Solution |
title_short | General Force-Field Parametrization Scheme for Molecular
Dynamics Simulations of Conjugated Materials in Solution |
title_sort | general force-field parametrization scheme for molecular
dynamics simulations of conjugated materials in solution |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4980687/ https://www.ncbi.nlm.nih.gov/pubmed/27397762 http://dx.doi.org/10.1021/acs.jctc.5b01195 |
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