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A Public Database of Memory and Naive B-Cell Receptor Sequences

The vast diversity of B-cell receptors (BCR) and secreted antibodies enables the recognition of, and response to, a wide range of epitopes, but this diversity has also limited our understanding of humoral immunity. We present a public database of more than 37 million unique BCR sequences from three...

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Autores principales: DeWitt, William S., Lindau, Paul, Snyder, Thomas M., Sherwood, Anna M., Vignali, Marissa, Carlson, Christopher S., Greenberg, Philip D., Duerkopp, Natalie, Emerson, Ryan O., Robins, Harlan S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981401/
https://www.ncbi.nlm.nih.gov/pubmed/27513338
http://dx.doi.org/10.1371/journal.pone.0160853
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author DeWitt, William S.
Lindau, Paul
Snyder, Thomas M.
Sherwood, Anna M.
Vignali, Marissa
Carlson, Christopher S.
Greenberg, Philip D.
Duerkopp, Natalie
Emerson, Ryan O.
Robins, Harlan S.
author_facet DeWitt, William S.
Lindau, Paul
Snyder, Thomas M.
Sherwood, Anna M.
Vignali, Marissa
Carlson, Christopher S.
Greenberg, Philip D.
Duerkopp, Natalie
Emerson, Ryan O.
Robins, Harlan S.
author_sort DeWitt, William S.
collection PubMed
description The vast diversity of B-cell receptors (BCR) and secreted antibodies enables the recognition of, and response to, a wide range of epitopes, but this diversity has also limited our understanding of humoral immunity. We present a public database of more than 37 million unique BCR sequences from three healthy adult donors that is many fold deeper than any existing resource, together with a set of online tools designed to facilitate the visualization and analysis of the annotated data. We estimate the clonal diversity of the naive and memory B-cell repertoires of healthy individuals, and provide a set of examples that illustrate the utility of the database, including several views of the basic properties of immunoglobulin heavy chain sequences, such as rearrangement length, subunit usage, and somatic hypermutation positions and dynamics.
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spelling pubmed-49814012016-08-29 A Public Database of Memory and Naive B-Cell Receptor Sequences DeWitt, William S. Lindau, Paul Snyder, Thomas M. Sherwood, Anna M. Vignali, Marissa Carlson, Christopher S. Greenberg, Philip D. Duerkopp, Natalie Emerson, Ryan O. Robins, Harlan S. PLoS One Research Article The vast diversity of B-cell receptors (BCR) and secreted antibodies enables the recognition of, and response to, a wide range of epitopes, but this diversity has also limited our understanding of humoral immunity. We present a public database of more than 37 million unique BCR sequences from three healthy adult donors that is many fold deeper than any existing resource, together with a set of online tools designed to facilitate the visualization and analysis of the annotated data. We estimate the clonal diversity of the naive and memory B-cell repertoires of healthy individuals, and provide a set of examples that illustrate the utility of the database, including several views of the basic properties of immunoglobulin heavy chain sequences, such as rearrangement length, subunit usage, and somatic hypermutation positions and dynamics. Public Library of Science 2016-08-11 /pmc/articles/PMC4981401/ /pubmed/27513338 http://dx.doi.org/10.1371/journal.pone.0160853 Text en © 2016 DeWitt et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
DeWitt, William S.
Lindau, Paul
Snyder, Thomas M.
Sherwood, Anna M.
Vignali, Marissa
Carlson, Christopher S.
Greenberg, Philip D.
Duerkopp, Natalie
Emerson, Ryan O.
Robins, Harlan S.
A Public Database of Memory and Naive B-Cell Receptor Sequences
title A Public Database of Memory and Naive B-Cell Receptor Sequences
title_full A Public Database of Memory and Naive B-Cell Receptor Sequences
title_fullStr A Public Database of Memory and Naive B-Cell Receptor Sequences
title_full_unstemmed A Public Database of Memory and Naive B-Cell Receptor Sequences
title_short A Public Database of Memory and Naive B-Cell Receptor Sequences
title_sort public database of memory and naive b-cell receptor sequences
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981401/
https://www.ncbi.nlm.nih.gov/pubmed/27513338
http://dx.doi.org/10.1371/journal.pone.0160853
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