Cargando…
A Public Database of Memory and Naive B-Cell Receptor Sequences
The vast diversity of B-cell receptors (BCR) and secreted antibodies enables the recognition of, and response to, a wide range of epitopes, but this diversity has also limited our understanding of humoral immunity. We present a public database of more than 37 million unique BCR sequences from three...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981401/ https://www.ncbi.nlm.nih.gov/pubmed/27513338 http://dx.doi.org/10.1371/journal.pone.0160853 |
_version_ | 1782447608291131392 |
---|---|
author | DeWitt, William S. Lindau, Paul Snyder, Thomas M. Sherwood, Anna M. Vignali, Marissa Carlson, Christopher S. Greenberg, Philip D. Duerkopp, Natalie Emerson, Ryan O. Robins, Harlan S. |
author_facet | DeWitt, William S. Lindau, Paul Snyder, Thomas M. Sherwood, Anna M. Vignali, Marissa Carlson, Christopher S. Greenberg, Philip D. Duerkopp, Natalie Emerson, Ryan O. Robins, Harlan S. |
author_sort | DeWitt, William S. |
collection | PubMed |
description | The vast diversity of B-cell receptors (BCR) and secreted antibodies enables the recognition of, and response to, a wide range of epitopes, but this diversity has also limited our understanding of humoral immunity. We present a public database of more than 37 million unique BCR sequences from three healthy adult donors that is many fold deeper than any existing resource, together with a set of online tools designed to facilitate the visualization and analysis of the annotated data. We estimate the clonal diversity of the naive and memory B-cell repertoires of healthy individuals, and provide a set of examples that illustrate the utility of the database, including several views of the basic properties of immunoglobulin heavy chain sequences, such as rearrangement length, subunit usage, and somatic hypermutation positions and dynamics. |
format | Online Article Text |
id | pubmed-4981401 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-49814012016-08-29 A Public Database of Memory and Naive B-Cell Receptor Sequences DeWitt, William S. Lindau, Paul Snyder, Thomas M. Sherwood, Anna M. Vignali, Marissa Carlson, Christopher S. Greenberg, Philip D. Duerkopp, Natalie Emerson, Ryan O. Robins, Harlan S. PLoS One Research Article The vast diversity of B-cell receptors (BCR) and secreted antibodies enables the recognition of, and response to, a wide range of epitopes, but this diversity has also limited our understanding of humoral immunity. We present a public database of more than 37 million unique BCR sequences from three healthy adult donors that is many fold deeper than any existing resource, together with a set of online tools designed to facilitate the visualization and analysis of the annotated data. We estimate the clonal diversity of the naive and memory B-cell repertoires of healthy individuals, and provide a set of examples that illustrate the utility of the database, including several views of the basic properties of immunoglobulin heavy chain sequences, such as rearrangement length, subunit usage, and somatic hypermutation positions and dynamics. Public Library of Science 2016-08-11 /pmc/articles/PMC4981401/ /pubmed/27513338 http://dx.doi.org/10.1371/journal.pone.0160853 Text en © 2016 DeWitt et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article DeWitt, William S. Lindau, Paul Snyder, Thomas M. Sherwood, Anna M. Vignali, Marissa Carlson, Christopher S. Greenberg, Philip D. Duerkopp, Natalie Emerson, Ryan O. Robins, Harlan S. A Public Database of Memory and Naive B-Cell Receptor Sequences |
title | A Public Database of Memory and Naive B-Cell Receptor Sequences |
title_full | A Public Database of Memory and Naive B-Cell Receptor Sequences |
title_fullStr | A Public Database of Memory and Naive B-Cell Receptor Sequences |
title_full_unstemmed | A Public Database of Memory and Naive B-Cell Receptor Sequences |
title_short | A Public Database of Memory and Naive B-Cell Receptor Sequences |
title_sort | public database of memory and naive b-cell receptor sequences |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981401/ https://www.ncbi.nlm.nih.gov/pubmed/27513338 http://dx.doi.org/10.1371/journal.pone.0160853 |
work_keys_str_mv | AT dewittwilliams apublicdatabaseofmemoryandnaivebcellreceptorsequences AT lindaupaul apublicdatabaseofmemoryandnaivebcellreceptorsequences AT snyderthomasm apublicdatabaseofmemoryandnaivebcellreceptorsequences AT sherwoodannam apublicdatabaseofmemoryandnaivebcellreceptorsequences AT vignalimarissa apublicdatabaseofmemoryandnaivebcellreceptorsequences AT carlsonchristophers apublicdatabaseofmemoryandnaivebcellreceptorsequences AT greenbergphilipd apublicdatabaseofmemoryandnaivebcellreceptorsequences AT duerkoppnatalie apublicdatabaseofmemoryandnaivebcellreceptorsequences AT emersonryano apublicdatabaseofmemoryandnaivebcellreceptorsequences AT robinsharlans apublicdatabaseofmemoryandnaivebcellreceptorsequences AT dewittwilliams publicdatabaseofmemoryandnaivebcellreceptorsequences AT lindaupaul publicdatabaseofmemoryandnaivebcellreceptorsequences AT snyderthomasm publicdatabaseofmemoryandnaivebcellreceptorsequences AT sherwoodannam publicdatabaseofmemoryandnaivebcellreceptorsequences AT vignalimarissa publicdatabaseofmemoryandnaivebcellreceptorsequences AT carlsonchristophers publicdatabaseofmemoryandnaivebcellreceptorsequences AT greenbergphilipd publicdatabaseofmemoryandnaivebcellreceptorsequences AT duerkoppnatalie publicdatabaseofmemoryandnaivebcellreceptorsequences AT emersonryano publicdatabaseofmemoryandnaivebcellreceptorsequences AT robinsharlans publicdatabaseofmemoryandnaivebcellreceptorsequences |