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Automated Detection of Lupus White Matter Lesions in MRI

Brain magnetic resonance imaging provides detailed information which can be used to detect and segment white matter lesions (WML). In this work we propose an approach to automatically segment WML in Lupus patients by using T1w and fluid-attenuated inversion recovery (FLAIR) images. Lupus WML appear...

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Autores principales: Roura, Eloy, Sarbu, Nicolae, Oliver, Arnau, Valverde, Sergi, González-Villà, Sandra, Cervera, Ricard, Bargalló, Núria, Lladó, Xavier
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981618/
https://www.ncbi.nlm.nih.gov/pubmed/27570507
http://dx.doi.org/10.3389/fninf.2016.00033
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author Roura, Eloy
Sarbu, Nicolae
Oliver, Arnau
Valverde, Sergi
González-Villà, Sandra
Cervera, Ricard
Bargalló, Núria
Lladó, Xavier
author_facet Roura, Eloy
Sarbu, Nicolae
Oliver, Arnau
Valverde, Sergi
González-Villà, Sandra
Cervera, Ricard
Bargalló, Núria
Lladó, Xavier
author_sort Roura, Eloy
collection PubMed
description Brain magnetic resonance imaging provides detailed information which can be used to detect and segment white matter lesions (WML). In this work we propose an approach to automatically segment WML in Lupus patients by using T1w and fluid-attenuated inversion recovery (FLAIR) images. Lupus WML appear as small focal abnormal tissue observed as hyperintensities in the FLAIR images. The quantification of these WML is a key factor for the stratification of lupus patients and therefore both lesion detection and segmentation play an important role. In our approach, the T1w image is first used to classify the three main tissues of the brain, white matter (WM), gray matter (GM), and cerebrospinal fluid (CSF), while the FLAIR image is then used to detect focal WML as outliers of its GM intensity distribution. A set of post-processing steps based on lesion size, tissue neighborhood, and location are used to refine the lesion candidates. The proposal is evaluated on 20 patients, presenting qualitative, and quantitative results in terms of precision and sensitivity of lesion detection [True Positive Rate (62%) and Positive Prediction Value (80%), respectively] as well as segmentation accuracy [Dice Similarity Coefficient (72%)]. Obtained results illustrate the validity of the approach to automatically detect and segment lupus lesions. Besides, our approach is publicly available as a SPM8/12 toolbox extension with a simple parameter configuration.
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spelling pubmed-49816182016-08-26 Automated Detection of Lupus White Matter Lesions in MRI Roura, Eloy Sarbu, Nicolae Oliver, Arnau Valverde, Sergi González-Villà, Sandra Cervera, Ricard Bargalló, Núria Lladó, Xavier Front Neuroinform Neuroscience Brain magnetic resonance imaging provides detailed information which can be used to detect and segment white matter lesions (WML). In this work we propose an approach to automatically segment WML in Lupus patients by using T1w and fluid-attenuated inversion recovery (FLAIR) images. Lupus WML appear as small focal abnormal tissue observed as hyperintensities in the FLAIR images. The quantification of these WML is a key factor for the stratification of lupus patients and therefore both lesion detection and segmentation play an important role. In our approach, the T1w image is first used to classify the three main tissues of the brain, white matter (WM), gray matter (GM), and cerebrospinal fluid (CSF), while the FLAIR image is then used to detect focal WML as outliers of its GM intensity distribution. A set of post-processing steps based on lesion size, tissue neighborhood, and location are used to refine the lesion candidates. The proposal is evaluated on 20 patients, presenting qualitative, and quantitative results in terms of precision and sensitivity of lesion detection [True Positive Rate (62%) and Positive Prediction Value (80%), respectively] as well as segmentation accuracy [Dice Similarity Coefficient (72%)]. Obtained results illustrate the validity of the approach to automatically detect and segment lupus lesions. Besides, our approach is publicly available as a SPM8/12 toolbox extension with a simple parameter configuration. Frontiers Media S.A. 2016-08-12 /pmc/articles/PMC4981618/ /pubmed/27570507 http://dx.doi.org/10.3389/fninf.2016.00033 Text en Copyright © 2016 Roura, Sarbu, Oliver, Valverde, González-Villà, Cervera, Bargalló and Lladó. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Roura, Eloy
Sarbu, Nicolae
Oliver, Arnau
Valverde, Sergi
González-Villà, Sandra
Cervera, Ricard
Bargalló, Núria
Lladó, Xavier
Automated Detection of Lupus White Matter Lesions in MRI
title Automated Detection of Lupus White Matter Lesions in MRI
title_full Automated Detection of Lupus White Matter Lesions in MRI
title_fullStr Automated Detection of Lupus White Matter Lesions in MRI
title_full_unstemmed Automated Detection of Lupus White Matter Lesions in MRI
title_short Automated Detection of Lupus White Matter Lesions in MRI
title_sort automated detection of lupus white matter lesions in mri
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981618/
https://www.ncbi.nlm.nih.gov/pubmed/27570507
http://dx.doi.org/10.3389/fninf.2016.00033
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