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Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts

OBJECTIVE: The abundance of text available in social media and health related forums along with the rich expression of public opinion have recently attracted the interest of the public health community to use these sources for pharmacovigilance. Based on the intuition that patients post about Advers...

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Autores principales: Korkontzelos, Ioannis, Nikfarjam, Azadeh, Shardlow, Matthew, Sarker, Abeed, Ananiadou, Sophia, Gonzalez, Graciela H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981644/
https://www.ncbi.nlm.nih.gov/pubmed/27363901
http://dx.doi.org/10.1016/j.jbi.2016.06.007
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author Korkontzelos, Ioannis
Nikfarjam, Azadeh
Shardlow, Matthew
Sarker, Abeed
Ananiadou, Sophia
Gonzalez, Graciela H.
author_facet Korkontzelos, Ioannis
Nikfarjam, Azadeh
Shardlow, Matthew
Sarker, Abeed
Ananiadou, Sophia
Gonzalez, Graciela H.
author_sort Korkontzelos, Ioannis
collection PubMed
description OBJECTIVE: The abundance of text available in social media and health related forums along with the rich expression of public opinion have recently attracted the interest of the public health community to use these sources for pharmacovigilance. Based on the intuition that patients post about Adverse Drug Reactions (ADRs) expressing negative sentiments, we investigate the effect of sentiment analysis features in locating ADR mentions. METHODS: We enrich the feature space of a state-of-the-art ADR identification method with sentiment analysis features. Using a corpus of posts from the DailyStrength forum and tweets annotated for ADR and indication mentions, we evaluate the extent to which sentiment analysis features help in locating ADR mentions and distinguishing them from indication mentions. RESULTS: Evaluation results show that sentiment analysis features marginally improve ADR identification in tweets and health related forum posts. Adding sentiment analysis features achieved a statistically significant F-measure increase from 72.14% to 73.22% in the Twitter part of an existing corpus using its original train/test split. Using stratified 10 × 10-fold cross-validation, statistically significant F-measure increases were shown in the DailyStrength part of the corpus, from 79.57% to 80.14%, and in the Twitter part of the corpus, from 66.91% to 69.16%. Moreover, sentiment analysis features are shown to reduce the number of ADRs being recognized as indications. CONCLUSION: This study shows that adding sentiment analysis features can marginally improve the performance of even a state-of-the-art ADR identification method. This improvement can be of use to pharmacovigilance practice, due to the rapidly increasing popularity of social media and health forums.
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spelling pubmed-49816442016-08-19 Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts Korkontzelos, Ioannis Nikfarjam, Azadeh Shardlow, Matthew Sarker, Abeed Ananiadou, Sophia Gonzalez, Graciela H. J Biomed Inform Article OBJECTIVE: The abundance of text available in social media and health related forums along with the rich expression of public opinion have recently attracted the interest of the public health community to use these sources for pharmacovigilance. Based on the intuition that patients post about Adverse Drug Reactions (ADRs) expressing negative sentiments, we investigate the effect of sentiment analysis features in locating ADR mentions. METHODS: We enrich the feature space of a state-of-the-art ADR identification method with sentiment analysis features. Using a corpus of posts from the DailyStrength forum and tweets annotated for ADR and indication mentions, we evaluate the extent to which sentiment analysis features help in locating ADR mentions and distinguishing them from indication mentions. RESULTS: Evaluation results show that sentiment analysis features marginally improve ADR identification in tweets and health related forum posts. Adding sentiment analysis features achieved a statistically significant F-measure increase from 72.14% to 73.22% in the Twitter part of an existing corpus using its original train/test split. Using stratified 10 × 10-fold cross-validation, statistically significant F-measure increases were shown in the DailyStrength part of the corpus, from 79.57% to 80.14%, and in the Twitter part of the corpus, from 66.91% to 69.16%. Moreover, sentiment analysis features are shown to reduce the number of ADRs being recognized as indications. CONCLUSION: This study shows that adding sentiment analysis features can marginally improve the performance of even a state-of-the-art ADR identification method. This improvement can be of use to pharmacovigilance practice, due to the rapidly increasing popularity of social media and health forums. Elsevier 2016-08 /pmc/articles/PMC4981644/ /pubmed/27363901 http://dx.doi.org/10.1016/j.jbi.2016.06.007 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Korkontzelos, Ioannis
Nikfarjam, Azadeh
Shardlow, Matthew
Sarker, Abeed
Ananiadou, Sophia
Gonzalez, Graciela H.
Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts
title Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts
title_full Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts
title_fullStr Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts
title_full_unstemmed Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts
title_short Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts
title_sort analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981644/
https://www.ncbi.nlm.nih.gov/pubmed/27363901
http://dx.doi.org/10.1016/j.jbi.2016.06.007
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