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Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein

New experiments dedicated for large IDPs backbone resonance assignment are presented. The most distinctive feature of all described techniques is the employment of MOCCA-XY16 mixing sequences to obtain effective magnetization transfers between carbonyl carbon backbone nuclei. The proposed 4 and 5 di...

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Autores principales: Żerko, Szymon, Byrski, Piotr, Włodarczyk-Pruszyński, Paweł, Górka, Michał, Ledolter, Karin, Masliah, Eliezer, Konrat, Robert, Koźmiński, Wiktor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4983291/
https://www.ncbi.nlm.nih.gov/pubmed/27430223
http://dx.doi.org/10.1007/s10858-016-0048-7
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author Żerko, Szymon
Byrski, Piotr
Włodarczyk-Pruszyński, Paweł
Górka, Michał
Ledolter, Karin
Masliah, Eliezer
Konrat, Robert
Koźmiński, Wiktor
author_facet Żerko, Szymon
Byrski, Piotr
Włodarczyk-Pruszyński, Paweł
Górka, Michał
Ledolter, Karin
Masliah, Eliezer
Konrat, Robert
Koźmiński, Wiktor
author_sort Żerko, Szymon
collection PubMed
description New experiments dedicated for large IDPs backbone resonance assignment are presented. The most distinctive feature of all described techniques is the employment of MOCCA-XY16 mixing sequences to obtain effective magnetization transfers between carbonyl carbon backbone nuclei. The proposed 4 and 5 dimensional experiments provide a high dispersion of obtained signals making them suitable for use in the case of large IDPs (application to 354 a. a. residues of Tau protein 3x isoform is presented) as well as provide both forward and backward connectivities. What is more, connecting short chains interrupted with proline residues is also possible. All the experiments employ non-uniform sampling. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-016-0048-7) contains supplementary material, which is available to authorized users.
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spelling pubmed-49832912016-08-25 Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein Żerko, Szymon Byrski, Piotr Włodarczyk-Pruszyński, Paweł Górka, Michał Ledolter, Karin Masliah, Eliezer Konrat, Robert Koźmiński, Wiktor J Biomol NMR Article New experiments dedicated for large IDPs backbone resonance assignment are presented. The most distinctive feature of all described techniques is the employment of MOCCA-XY16 mixing sequences to obtain effective magnetization transfers between carbonyl carbon backbone nuclei. The proposed 4 and 5 dimensional experiments provide a high dispersion of obtained signals making them suitable for use in the case of large IDPs (application to 354 a. a. residues of Tau protein 3x isoform is presented) as well as provide both forward and backward connectivities. What is more, connecting short chains interrupted with proline residues is also possible. All the experiments employ non-uniform sampling. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-016-0048-7) contains supplementary material, which is available to authorized users. Springer Netherlands 2016-07-18 2016 /pmc/articles/PMC4983291/ /pubmed/27430223 http://dx.doi.org/10.1007/s10858-016-0048-7 Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Żerko, Szymon
Byrski, Piotr
Włodarczyk-Pruszyński, Paweł
Górka, Michał
Ledolter, Karin
Masliah, Eliezer
Konrat, Robert
Koźmiński, Wiktor
Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein
title Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein
title_full Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein
title_fullStr Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein
title_full_unstemmed Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein
title_short Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein
title_sort five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to tau3x protein
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4983291/
https://www.ncbi.nlm.nih.gov/pubmed/27430223
http://dx.doi.org/10.1007/s10858-016-0048-7
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