Cargando…
Binding Isotherms and Time Courses Readily from Magnetic Resonance
[Image: see text] Evidence is presented that binding isotherms, simple or biphasic, can be extracted directly from noninterpreted, complex 2D NMR spectra using principal component analysis (PCA) to reveal the largest trend(s) across the series. This approach renders peak picking unnecessary for trac...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2016
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987165/ https://www.ncbi.nlm.nih.gov/pubmed/27458657 http://dx.doi.org/10.1021/acs.analchem.6b01918 |
_version_ | 1782448272481189888 |
---|---|
author | Xu, Jia Van Doren, Steven R. |
author_facet | Xu, Jia Van Doren, Steven R. |
author_sort | Xu, Jia |
collection | PubMed |
description | [Image: see text] Evidence is presented that binding isotherms, simple or biphasic, can be extracted directly from noninterpreted, complex 2D NMR spectra using principal component analysis (PCA) to reveal the largest trend(s) across the series. This approach renders peak picking unnecessary for tracking population changes. In 1:1 binding, the first principal component captures the binding isotherm from NMR-detected titrations in fast, slow, and even intermediate and mixed exchange regimes, as illustrated for phospholigand associations with proteins. Although the sigmoidal shifts and line broadening of intermediate exchange distorts binding isotherms constructed conventionally, applying PCA directly to these spectra along with Pareto scaling overcomes the distortion. Applying PCA to time-domain NMR data also yields binding isotherms from titrations in fast or slow exchange. The algorithm readily extracts from magnetic resonance imaging movie time courses such as breathing and heart rate in chest imaging. Similarly, two-step binding processes detected by NMR are easily captured by principal components 1 and 2. PCA obviates the customary focus on specific peaks or regions of images. Applying it directly to a series of complex data will easily delineate binding isotherms, equilibrium shifts, and time courses of reactions or fluctuations. |
format | Online Article Text |
id | pubmed-4987165 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-49871652016-08-19 Binding Isotherms and Time Courses Readily from Magnetic Resonance Xu, Jia Van Doren, Steven R. Anal Chem [Image: see text] Evidence is presented that binding isotherms, simple or biphasic, can be extracted directly from noninterpreted, complex 2D NMR spectra using principal component analysis (PCA) to reveal the largest trend(s) across the series. This approach renders peak picking unnecessary for tracking population changes. In 1:1 binding, the first principal component captures the binding isotherm from NMR-detected titrations in fast, slow, and even intermediate and mixed exchange regimes, as illustrated for phospholigand associations with proteins. Although the sigmoidal shifts and line broadening of intermediate exchange distorts binding isotherms constructed conventionally, applying PCA directly to these spectra along with Pareto scaling overcomes the distortion. Applying PCA to time-domain NMR data also yields binding isotherms from titrations in fast or slow exchange. The algorithm readily extracts from magnetic resonance imaging movie time courses such as breathing and heart rate in chest imaging. Similarly, two-step binding processes detected by NMR are easily captured by principal components 1 and 2. PCA obviates the customary focus on specific peaks or regions of images. Applying it directly to a series of complex data will easily delineate binding isotherms, equilibrium shifts, and time courses of reactions or fluctuations. American Chemical Society 2016-07-26 2016-08-16 /pmc/articles/PMC4987165/ /pubmed/27458657 http://dx.doi.org/10.1021/acs.analchem.6b01918 Text en Copyright © 2016 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Xu, Jia Van Doren, Steven R. Binding Isotherms and Time Courses Readily from Magnetic Resonance |
title | Binding Isotherms and Time Courses Readily from Magnetic
Resonance |
title_full | Binding Isotherms and Time Courses Readily from Magnetic
Resonance |
title_fullStr | Binding Isotherms and Time Courses Readily from Magnetic
Resonance |
title_full_unstemmed | Binding Isotherms and Time Courses Readily from Magnetic
Resonance |
title_short | Binding Isotherms and Time Courses Readily from Magnetic
Resonance |
title_sort | binding isotherms and time courses readily from magnetic
resonance |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987165/ https://www.ncbi.nlm.nih.gov/pubmed/27458657 http://dx.doi.org/10.1021/acs.analchem.6b01918 |
work_keys_str_mv | AT xujia bindingisothermsandtimecoursesreadilyfrommagneticresonance AT vandorenstevenr bindingisothermsandtimecoursesreadilyfrommagneticresonance |