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Association Analysis in Rice: From Application to Utilization
Association analysis based on linkage disequilibrium (LD) is an efficient way to dissect complex traits and to identify gene functions in rice. Although association analysis is an effective way to construct fine maps for quantitative traits, there are a few issues which need to be addressed. In this...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987372/ https://www.ncbi.nlm.nih.gov/pubmed/27582745 http://dx.doi.org/10.3389/fpls.2016.01202 |
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author | Zhang, Peng Zhong, Kaizhen Shahid, Muhammad Qasim Tong, Hanhua |
author_facet | Zhang, Peng Zhong, Kaizhen Shahid, Muhammad Qasim Tong, Hanhua |
author_sort | Zhang, Peng |
collection | PubMed |
description | Association analysis based on linkage disequilibrium (LD) is an efficient way to dissect complex traits and to identify gene functions in rice. Although association analysis is an effective way to construct fine maps for quantitative traits, there are a few issues which need to be addressed. In this review, we will first summarize type, structure, and LD level of populations used for association analysis of rice, and then discuss the genotyping methods and statistical approaches used for association analysis in rice. Moreover, we will review current shortcomings and benefits of association analysis as well as specific types of future research to overcome these shortcomings. Furthermore, we will analyze the reasons for the underutilization of the results within association analysis in rice breeding. |
format | Online Article Text |
id | pubmed-4987372 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-49873722016-08-31 Association Analysis in Rice: From Application to Utilization Zhang, Peng Zhong, Kaizhen Shahid, Muhammad Qasim Tong, Hanhua Front Plant Sci Plant Science Association analysis based on linkage disequilibrium (LD) is an efficient way to dissect complex traits and to identify gene functions in rice. Although association analysis is an effective way to construct fine maps for quantitative traits, there are a few issues which need to be addressed. In this review, we will first summarize type, structure, and LD level of populations used for association analysis of rice, and then discuss the genotyping methods and statistical approaches used for association analysis in rice. Moreover, we will review current shortcomings and benefits of association analysis as well as specific types of future research to overcome these shortcomings. Furthermore, we will analyze the reasons for the underutilization of the results within association analysis in rice breeding. Frontiers Media S.A. 2016-08-17 /pmc/articles/PMC4987372/ /pubmed/27582745 http://dx.doi.org/10.3389/fpls.2016.01202 Text en Copyright © 2016 Zhang, Zhong, Shahid and Tong. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Zhang, Peng Zhong, Kaizhen Shahid, Muhammad Qasim Tong, Hanhua Association Analysis in Rice: From Application to Utilization |
title | Association Analysis in Rice: From Application to Utilization |
title_full | Association Analysis in Rice: From Application to Utilization |
title_fullStr | Association Analysis in Rice: From Application to Utilization |
title_full_unstemmed | Association Analysis in Rice: From Application to Utilization |
title_short | Association Analysis in Rice: From Application to Utilization |
title_sort | association analysis in rice: from application to utilization |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987372/ https://www.ncbi.nlm.nih.gov/pubmed/27582745 http://dx.doi.org/10.3389/fpls.2016.01202 |
work_keys_str_mv | AT zhangpeng associationanalysisinricefromapplicationtoutilization AT zhongkaizhen associationanalysisinricefromapplicationtoutilization AT shahidmuhammadqasim associationanalysisinricefromapplicationtoutilization AT tonghanhua associationanalysisinricefromapplicationtoutilization |