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W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis. W-IQ-TREE supports multiple sequence types (DNA, protein, codon, binary and morphology) in common alignment formats and a wide ran...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987875/ https://www.ncbi.nlm.nih.gov/pubmed/27084950 http://dx.doi.org/10.1093/nar/gkw256 |
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author | Trifinopoulos, Jana Nguyen, Lam-Tung von Haeseler, Arndt Minh, Bui Quang |
author_facet | Trifinopoulos, Jana Nguyen, Lam-Tung von Haeseler, Arndt Minh, Bui Quang |
author_sort | Trifinopoulos, Jana |
collection | PubMed |
description | This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis. W-IQ-TREE supports multiple sequence types (DNA, protein, codon, binary and morphology) in common alignment formats and a wide range of evolutionary models including mixture and partition models. W-IQ-TREE performs fast model selection, partition scheme finding, efficient tree reconstruction, ultrafast bootstrapping, branch tests, and tree topology tests. All computations are conducted on a dedicated computer cluster and the users receive the results via URL or email. W-IQ-TREE is available at http://iqtree.cibiv.univie.ac.at. It is free and open to all users and there is no login requirement. |
format | Online Article Text |
id | pubmed-4987875 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-49878752016-08-22 W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis Trifinopoulos, Jana Nguyen, Lam-Tung von Haeseler, Arndt Minh, Bui Quang Nucleic Acids Res Web Server issue This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis. W-IQ-TREE supports multiple sequence types (DNA, protein, codon, binary and morphology) in common alignment formats and a wide range of evolutionary models including mixture and partition models. W-IQ-TREE performs fast model selection, partition scheme finding, efficient tree reconstruction, ultrafast bootstrapping, branch tests, and tree topology tests. All computations are conducted on a dedicated computer cluster and the users receive the results via URL or email. W-IQ-TREE is available at http://iqtree.cibiv.univie.ac.at. It is free and open to all users and there is no login requirement. Oxford University Press 2016-07-08 2016-04-15 /pmc/articles/PMC4987875/ /pubmed/27084950 http://dx.doi.org/10.1093/nar/gkw256 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Web Server issue Trifinopoulos, Jana Nguyen, Lam-Tung von Haeseler, Arndt Minh, Bui Quang W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis |
title | W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis |
title_full | W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis |
title_fullStr | W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis |
title_full_unstemmed | W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis |
title_short | W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis |
title_sort | w-iq-tree: a fast online phylogenetic tool for maximum likelihood analysis |
topic | Web Server issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987875/ https://www.ncbi.nlm.nih.gov/pubmed/27084950 http://dx.doi.org/10.1093/nar/gkw256 |
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