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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Interactive Tree Of Life (http://itol.embl.de) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. It is freely available and open to everyone. The current version was completely redesigned and rewritten, utilizing current web technologies for speedy and streamlin...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987883/ https://www.ncbi.nlm.nih.gov/pubmed/27095192 http://dx.doi.org/10.1093/nar/gkw290 |
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author | Letunic, Ivica Bork, Peer |
author_facet | Letunic, Ivica Bork, Peer |
author_sort | Letunic, Ivica |
collection | PubMed |
description | Interactive Tree Of Life (http://itol.embl.de) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. It is freely available and open to everyone. The current version was completely redesigned and rewritten, utilizing current web technologies for speedy and streamlined processing. Numerous new features were introduced and several new data types are now supported. Trees with up to 100,000 leaves can now be efficiently displayed. Full interactive control over precise positioning of various annotation features and an unlimited number of datasets allow the easy creation of complex tree visualizations. iTOL 3 is the first tool which supports direct visualization of the recently proposed phylogenetic placements format. Finally, iTOL's account system has been redesigned to simplify the management of trees in user-defined workspaces and projects, as it is heavily used and currently handles already more than 500,000 trees from more than 10,000 individual users. |
format | Online Article Text |
id | pubmed-4987883 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-49878832016-08-22 Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees Letunic, Ivica Bork, Peer Nucleic Acids Res Web Server issue Interactive Tree Of Life (http://itol.embl.de) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. It is freely available and open to everyone. The current version was completely redesigned and rewritten, utilizing current web technologies for speedy and streamlined processing. Numerous new features were introduced and several new data types are now supported. Trees with up to 100,000 leaves can now be efficiently displayed. Full interactive control over precise positioning of various annotation features and an unlimited number of datasets allow the easy creation of complex tree visualizations. iTOL 3 is the first tool which supports direct visualization of the recently proposed phylogenetic placements format. Finally, iTOL's account system has been redesigned to simplify the management of trees in user-defined workspaces and projects, as it is heavily used and currently handles already more than 500,000 trees from more than 10,000 individual users. Oxford University Press 2016-07-08 2016-04-19 /pmc/articles/PMC4987883/ /pubmed/27095192 http://dx.doi.org/10.1093/nar/gkw290 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Web Server issue Letunic, Ivica Bork, Peer Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees |
title | Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees |
title_full | Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees |
title_fullStr | Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees |
title_full_unstemmed | Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees |
title_short | Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees |
title_sort | interactive tree of life (itol) v3: an online tool for the display and annotation of phylogenetic and other trees |
topic | Web Server issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987883/ https://www.ncbi.nlm.nih.gov/pubmed/27095192 http://dx.doi.org/10.1093/nar/gkw290 |
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