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LassoProt: server to analyze biopolymers with lassos

The LassoProt server, http://lassoprot.cent.uw.edu.pl/, enables analysis of biopolymers with entangled configurations called lassos. The server offers various ways of visualizing lasso configurations, as well as their time trajectories, with all the results and plots downloadable. Broad spectrum of...

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Detalles Bibliográficos
Autores principales: Dabrowski-Tumanski, Pawel, Niemyska, Wanda, Pasznik, Pawel, Sulkowska, Joanna I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987892/
https://www.ncbi.nlm.nih.gov/pubmed/27131383
http://dx.doi.org/10.1093/nar/gkw308
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author Dabrowski-Tumanski, Pawel
Niemyska, Wanda
Pasznik, Pawel
Sulkowska, Joanna I.
author_facet Dabrowski-Tumanski, Pawel
Niemyska, Wanda
Pasznik, Pawel
Sulkowska, Joanna I.
author_sort Dabrowski-Tumanski, Pawel
collection PubMed
description The LassoProt server, http://lassoprot.cent.uw.edu.pl/, enables analysis of biopolymers with entangled configurations called lassos. The server offers various ways of visualizing lasso configurations, as well as their time trajectories, with all the results and plots downloadable. Broad spectrum of applications makes LassoProt a useful tool for biologists, biophysicists, chemists, polymer physicists and mathematicians. The server and our methods have been validated on the whole PDB, and the results constitute the database of proteins with complex lassos, supported with basic biological data. This database can serve as a source of information about protein geometry and entanglement-function correlations, as a reference set in protein modeling, and for many other purposes.
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spelling pubmed-49878922016-08-22 LassoProt: server to analyze biopolymers with lassos Dabrowski-Tumanski, Pawel Niemyska, Wanda Pasznik, Pawel Sulkowska, Joanna I. Nucleic Acids Res Web Server issue The LassoProt server, http://lassoprot.cent.uw.edu.pl/, enables analysis of biopolymers with entangled configurations called lassos. The server offers various ways of visualizing lasso configurations, as well as their time trajectories, with all the results and plots downloadable. Broad spectrum of applications makes LassoProt a useful tool for biologists, biophysicists, chemists, polymer physicists and mathematicians. The server and our methods have been validated on the whole PDB, and the results constitute the database of proteins with complex lassos, supported with basic biological data. This database can serve as a source of information about protein geometry and entanglement-function correlations, as a reference set in protein modeling, and for many other purposes. Oxford University Press 2016-07-08 2016-04-29 /pmc/articles/PMC4987892/ /pubmed/27131383 http://dx.doi.org/10.1093/nar/gkw308 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Web Server issue
Dabrowski-Tumanski, Pawel
Niemyska, Wanda
Pasznik, Pawel
Sulkowska, Joanna I.
LassoProt: server to analyze biopolymers with lassos
title LassoProt: server to analyze biopolymers with lassos
title_full LassoProt: server to analyze biopolymers with lassos
title_fullStr LassoProt: server to analyze biopolymers with lassos
title_full_unstemmed LassoProt: server to analyze biopolymers with lassos
title_short LassoProt: server to analyze biopolymers with lassos
title_sort lassoprot: server to analyze biopolymers with lassos
topic Web Server issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987892/
https://www.ncbi.nlm.nih.gov/pubmed/27131383
http://dx.doi.org/10.1093/nar/gkw308
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