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LassoProt: server to analyze biopolymers with lassos
The LassoProt server, http://lassoprot.cent.uw.edu.pl/, enables analysis of biopolymers with entangled configurations called lassos. The server offers various ways of visualizing lasso configurations, as well as their time trajectories, with all the results and plots downloadable. Broad spectrum of...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987892/ https://www.ncbi.nlm.nih.gov/pubmed/27131383 http://dx.doi.org/10.1093/nar/gkw308 |
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author | Dabrowski-Tumanski, Pawel Niemyska, Wanda Pasznik, Pawel Sulkowska, Joanna I. |
author_facet | Dabrowski-Tumanski, Pawel Niemyska, Wanda Pasznik, Pawel Sulkowska, Joanna I. |
author_sort | Dabrowski-Tumanski, Pawel |
collection | PubMed |
description | The LassoProt server, http://lassoprot.cent.uw.edu.pl/, enables analysis of biopolymers with entangled configurations called lassos. The server offers various ways of visualizing lasso configurations, as well as their time trajectories, with all the results and plots downloadable. Broad spectrum of applications makes LassoProt a useful tool for biologists, biophysicists, chemists, polymer physicists and mathematicians. The server and our methods have been validated on the whole PDB, and the results constitute the database of proteins with complex lassos, supported with basic biological data. This database can serve as a source of information about protein geometry and entanglement-function correlations, as a reference set in protein modeling, and for many other purposes. |
format | Online Article Text |
id | pubmed-4987892 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-49878922016-08-22 LassoProt: server to analyze biopolymers with lassos Dabrowski-Tumanski, Pawel Niemyska, Wanda Pasznik, Pawel Sulkowska, Joanna I. Nucleic Acids Res Web Server issue The LassoProt server, http://lassoprot.cent.uw.edu.pl/, enables analysis of biopolymers with entangled configurations called lassos. The server offers various ways of visualizing lasso configurations, as well as their time trajectories, with all the results and plots downloadable. Broad spectrum of applications makes LassoProt a useful tool for biologists, biophysicists, chemists, polymer physicists and mathematicians. The server and our methods have been validated on the whole PDB, and the results constitute the database of proteins with complex lassos, supported with basic biological data. This database can serve as a source of information about protein geometry and entanglement-function correlations, as a reference set in protein modeling, and for many other purposes. Oxford University Press 2016-07-08 2016-04-29 /pmc/articles/PMC4987892/ /pubmed/27131383 http://dx.doi.org/10.1093/nar/gkw308 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Web Server issue Dabrowski-Tumanski, Pawel Niemyska, Wanda Pasznik, Pawel Sulkowska, Joanna I. LassoProt: server to analyze biopolymers with lassos |
title | LassoProt: server to analyze biopolymers with lassos |
title_full | LassoProt: server to analyze biopolymers with lassos |
title_fullStr | LassoProt: server to analyze biopolymers with lassos |
title_full_unstemmed | LassoProt: server to analyze biopolymers with lassos |
title_short | LassoProt: server to analyze biopolymers with lassos |
title_sort | lassoprot: server to analyze biopolymers with lassos |
topic | Web Server issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987892/ https://www.ncbi.nlm.nih.gov/pubmed/27131383 http://dx.doi.org/10.1093/nar/gkw308 |
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