Cargando…

systemsDock: a web server for network pharmacology-based prediction and analysis

We present systemsDock, a web server for network pharmacology-based prediction and analysis, which permits docking simulation and molecular pathway map for comprehensive characterization of ligand selectivity and interpretation of ligand action on a complex molecular network. It incorporates an elab...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hsin, Kun-Yi, Matsuoka, Yukiko, Asai, Yoshiyuki, Kamiyoshi, Kyota, Watanabe, Tokiko, Kawaoka, Yoshihiro, Kitano, Hiroaki
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Web Server Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987901/ https://www.ncbi.nlm.nih.gov/pubmed/27131384 http://dx.doi.org/10.1093/nar/gkw335

Ejemplares similares

NPDock: a web server for protein–nucleic acid docking
por: Tuszynska, Irina, et al.
Publicado: (2015)

CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site
por: Kurcinski, Mateusz, et al.
Publicado: (2015)

The pepATTRACT web server for blind, large-scale peptide–protein docking
por: de Vries, Sjoerd J., et al.
Publicado: (2017)

HawkDock: a web server to predict and analyze the protein–protein complex based on computational docking and MM/GBSA
por: Weng, Gaoqi, et al.
Publicado: (2019)

HPEPDOCK: a web server for blind peptide–protein docking based on a hierarchical algorithm
por: Zhou, Pei, et al.
Publicado: (2018)

APPRIS WebServer and WebServices
por: Rodriguez, Jose Manuel, et al.
Publicado: (2015)

HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry
por: Yan, Yumeng, et al.
Publicado: (2018)

HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy
por: Yan, Yumeng, et al.
Publicado: (2017)

HMMER web server: 2015 update
por: Finn, Robert D., et al.
Publicado: (2015)

HMMER web server: 2018 update
por: Potter, Simon C, et al.
Publicado: (2018)

Genonets server—a web server for the construction, analysis and visualization of genotype networks
por: Khalid, Fahad, et al.
Publicado: (2016)

Rtools: a web server for various secondary structural analyses on single RNA sequences
por: Hamada, Michiaki, et al.
Publicado: (2016)

Identification and visualization of protein binding regions with the ArDock server
por: Reille, Sébastien, et al.
Publicado: (2018)

PSSweb: protein structural statistics web server
por: Gaillard, Thomas, et al.
Publicado: (2016)

Amino Acid Interaction (INTAA) web server
por: Galgonek, Jakub, et al.
Publicado: (2017)

webSDA: a web server to simulate macromolecular diffusional association
por: Yu, Xiaofeng, et al.
Publicado: (2015)

Web-Beagle: a web server for the alignment of RNA secondary structures
por: Mattei, Eugenio, et al.
Publicado: (2015)

The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions
por: Jiménez-García, Brian, et al.
Publicado: (2023)

CSAR-web: a web server of contig scaffolding using algebraic rearrangements
por: Chen, Kun-Tze, et al.
Publicado: (2018)

PrankWeb: a web server for ligand binding site prediction and visualization
por: Jendele, Lukas, et al.
Publicado: (2019)

InterEvDock: a docking server to predict the structure of protein–protein interactions using evolutionary information
por: Yu, Jinchao, et al.
Publicado: (2016)

PockDrug-Server: a new web server for predicting pocket druggability on holo and apo proteins
por: Hussein, Hiba Abi, et al.
Publicado: (2015)

WebFARM: web server for finite automated restriction mapping
por: Singh, Tiratha Raj
Publicado: (2010)

pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature
por: Li, Peng-Hsuan, et al.
Publicado: (2022)

CCTOP: a Consensus Constrained TOPology prediction web server
por: Dobson, László, et al.
Publicado: (2015)

ACFIS: a web server for fragment-based drug discovery
por: Hao, Ge-Fei, et al.
Publicado: (2016)

CTLPScanner: a web server for chromothripsis-like pattern detection
por: Yang, Jian, et al.
Publicado: (2016)

Companion: a web server for annotation and analysis of parasite genomes
por: Steinbiss, Sascha, et al.
Publicado: (2016)

PANNZER2: a rapid functional annotation web server
por: Törönen, Petri, et al.
Publicado: (2018)

BUSCA: an integrative web server to predict subcellular localization of proteins
por: Savojardo, Castrense, et al.
Publicado: (2018)

FireProt: web server for automated design of thermostable proteins
por: Musil, Milos, et al.
Publicado: (2017)

DOGMA: a web server for proteome and transcriptome quality assessment
por: Kemena, Carsten, et al.
Publicado: (2019)

ProteoVision: web server for advanced visualization of ribosomal proteins
por: Penev, Petar I, et al.
Publicado: (2021)

IRSOM2: a web server for predicting bifunctional RNAs
por: Postic, Guillaume, et al.
Publicado: (2023)

GASS-WEB: a web server for identifying enzyme active sites based on genetic algorithms
por: Moraes, João P. A., et al.
Publicado: (2017)

InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs
por: Quignot, Chloé, et al.
Publicado: (2018)

3Drefine: an interactive web server for efficient protein structure refinement
por: Bhattacharya, Debswapna, et al.
Publicado: (2016)

minepath.org: a free interactive pathway analysis web server
por: Koumakis, Lefteris, et al.
Publicado: (2017)

SuperCYPsPred—a web server for the prediction of cytochrome activity
por: Banerjee, Priyanka, et al.
Publicado: (2020)

BEERE: a web server for biomedical entity expansion, ranking and explorations
por: Yue, Zongliang, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_bsr8tugrc8gmlvh71vqffbi94c