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ICM: a web server for integrated clustering of multi-dimensional biomedical data

Large-scale efforts for parallel acquisition of multi-omics profiling continue to generate extensive amounts of multi-dimensional biomedical data. Thus, integrated clustering of multiple types of omics data is essential for developing individual-based treatments and precision medicine. However, whil...

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Detalles Bibliográficos
Autores principales: He, Song, He, Haochen, Xu, Wenjian, Huang, Xin, Jiang, Shuai, Li, Fei, He, Fuchu, Bo, Xiaochen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987925/
https://www.ncbi.nlm.nih.gov/pubmed/27131784
http://dx.doi.org/10.1093/nar/gkw378
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author He, Song
He, Haochen
Xu, Wenjian
Huang, Xin
Jiang, Shuai
Li, Fei
He, Fuchu
Bo, Xiaochen
author_facet He, Song
He, Haochen
Xu, Wenjian
Huang, Xin
Jiang, Shuai
Li, Fei
He, Fuchu
Bo, Xiaochen
author_sort He, Song
collection PubMed
description Large-scale efforts for parallel acquisition of multi-omics profiling continue to generate extensive amounts of multi-dimensional biomedical data. Thus, integrated clustering of multiple types of omics data is essential for developing individual-based treatments and precision medicine. However, while rapid progress has been made, methods for integrated clustering are lacking an intuitive web interface that facilitates the biomedical researchers without sufficient programming skills. Here, we present a web tool, named Integrated Clustering of Multi-dimensional biomedical data (ICM), that provides an interface from which to fuse, cluster and visualize multi-dimensional biomedical data and knowledge. With ICM, users can explore the heterogeneity of a disease or a biological process by identifying subgroups of patients. The results obtained can then be interactively modified by using an intuitive user interface. Researchers can also exchange the results from ICM with collaborators via a web link containing a Project ID number that will directly pull up the analysis results being shared. ICM also support incremental clustering that allows users to add new sample data into the data of a previous study to obtain a clustering result. Currently, the ICM web server is available with no login requirement and at no cost at http://biotech.bmi.ac.cn/icm/.
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spelling pubmed-49879252016-08-22 ICM: a web server for integrated clustering of multi-dimensional biomedical data He, Song He, Haochen Xu, Wenjian Huang, Xin Jiang, Shuai Li, Fei He, Fuchu Bo, Xiaochen Nucleic Acids Res Web Server issue Large-scale efforts for parallel acquisition of multi-omics profiling continue to generate extensive amounts of multi-dimensional biomedical data. Thus, integrated clustering of multiple types of omics data is essential for developing individual-based treatments and precision medicine. However, while rapid progress has been made, methods for integrated clustering are lacking an intuitive web interface that facilitates the biomedical researchers without sufficient programming skills. Here, we present a web tool, named Integrated Clustering of Multi-dimensional biomedical data (ICM), that provides an interface from which to fuse, cluster and visualize multi-dimensional biomedical data and knowledge. With ICM, users can explore the heterogeneity of a disease or a biological process by identifying subgroups of patients. The results obtained can then be interactively modified by using an intuitive user interface. Researchers can also exchange the results from ICM with collaborators via a web link containing a Project ID number that will directly pull up the analysis results being shared. ICM also support incremental clustering that allows users to add new sample data into the data of a previous study to obtain a clustering result. Currently, the ICM web server is available with no login requirement and at no cost at http://biotech.bmi.ac.cn/icm/. Oxford University Press 2016-07-08 2016-04-30 /pmc/articles/PMC4987925/ /pubmed/27131784 http://dx.doi.org/10.1093/nar/gkw378 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Web Server issue
He, Song
He, Haochen
Xu, Wenjian
Huang, Xin
Jiang, Shuai
Li, Fei
He, Fuchu
Bo, Xiaochen
ICM: a web server for integrated clustering of multi-dimensional biomedical data
title ICM: a web server for integrated clustering of multi-dimensional biomedical data
title_full ICM: a web server for integrated clustering of multi-dimensional biomedical data
title_fullStr ICM: a web server for integrated clustering of multi-dimensional biomedical data
title_full_unstemmed ICM: a web server for integrated clustering of multi-dimensional biomedical data
title_short ICM: a web server for integrated clustering of multi-dimensional biomedical data
title_sort icm: a web server for integrated clustering of multi-dimensional biomedical data
topic Web Server issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987925/
https://www.ncbi.nlm.nih.gov/pubmed/27131784
http://dx.doi.org/10.1093/nar/gkw378
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