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MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences

Molecular recognition features, MoRFs, are short segments within longer disordered protein regions that bind to globular protein domains in a process known as disorder-to-order transition. MoRFs have been found to play a significant role in signaling and regulatory processes in cells. High-confidenc...

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Detalles Bibliográficos
Autores principales: Malhis, Nawar, Jacobson, Matthew, Gsponer, Jörg
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987941/
https://www.ncbi.nlm.nih.gov/pubmed/27174932
http://dx.doi.org/10.1093/nar/gkw409
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author Malhis, Nawar
Jacobson, Matthew
Gsponer, Jörg
author_facet Malhis, Nawar
Jacobson, Matthew
Gsponer, Jörg
author_sort Malhis, Nawar
collection PubMed
description Molecular recognition features, MoRFs, are short segments within longer disordered protein regions that bind to globular protein domains in a process known as disorder-to-order transition. MoRFs have been found to play a significant role in signaling and regulatory processes in cells. High-confidence computational identification of MoRFs remains an important challenge. In this work, we introduce MoRFchibi SYSTEM that contains three MoRF predictors: MoRF(CHiBi), a basic predictor best suited as a component in other applications, MoRF(CHiBi_)(Light), ideal for high-throughput predictions and MoRF(CHiBi_)(Web), slower than the other two but best for high accuracy predictions. Results show that MoRFchibi SYSTEM provides more than double the precision of other predictors. MoRFchibi SYSTEM is available in three different forms: as HTML web server, RESTful web server and downloadable software at: http://www.chibi.ubc.ca/faculty/joerg-gsponer/gsponer-lab/software/morf_chibi/
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spelling pubmed-49879412016-08-22 MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences Malhis, Nawar Jacobson, Matthew Gsponer, Jörg Nucleic Acids Res Web Server issue Molecular recognition features, MoRFs, are short segments within longer disordered protein regions that bind to globular protein domains in a process known as disorder-to-order transition. MoRFs have been found to play a significant role in signaling and regulatory processes in cells. High-confidence computational identification of MoRFs remains an important challenge. In this work, we introduce MoRFchibi SYSTEM that contains three MoRF predictors: MoRF(CHiBi), a basic predictor best suited as a component in other applications, MoRF(CHiBi_)(Light), ideal for high-throughput predictions and MoRF(CHiBi_)(Web), slower than the other two but best for high accuracy predictions. Results show that MoRFchibi SYSTEM provides more than double the precision of other predictors. MoRFchibi SYSTEM is available in three different forms: as HTML web server, RESTful web server and downloadable software at: http://www.chibi.ubc.ca/faculty/joerg-gsponer/gsponer-lab/software/morf_chibi/ Oxford University Press 2016-07-08 2016-05-12 /pmc/articles/PMC4987941/ /pubmed/27174932 http://dx.doi.org/10.1093/nar/gkw409 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server issue
Malhis, Nawar
Jacobson, Matthew
Gsponer, Jörg
MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences
title MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences
title_full MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences
title_fullStr MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences
title_full_unstemmed MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences
title_short MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences
title_sort morfchibi system: software tools for the identification of morfs in protein sequences
topic Web Server issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987941/
https://www.ncbi.nlm.nih.gov/pubmed/27174932
http://dx.doi.org/10.1093/nar/gkw409
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