Cargando…

Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science

One of the prevailing applications of machine learning is the use of predictive modelling in clinical survival analysis. In this work, we present our view of the current situation of computer tools for survival analysis, stressing the need of transferring the latest results in the field of machine l...

Descripción completa

Detalles Bibliográficos
Autores principales: Montes-Torres, Julio, Subirats, José Luis, Ribelles, Nuria, Urda, Daniel, Franco, Leonardo, Alba, Emilio, Jerez, José Manuel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4988664/
https://www.ncbi.nlm.nih.gov/pubmed/27532883
http://dx.doi.org/10.1371/journal.pone.0161135
_version_ 1782448458587701248
author Montes-Torres, Julio
Subirats, José Luis
Ribelles, Nuria
Urda, Daniel
Franco, Leonardo
Alba, Emilio
Jerez, José Manuel
author_facet Montes-Torres, Julio
Subirats, José Luis
Ribelles, Nuria
Urda, Daniel
Franco, Leonardo
Alba, Emilio
Jerez, José Manuel
author_sort Montes-Torres, Julio
collection PubMed
description One of the prevailing applications of machine learning is the use of predictive modelling in clinical survival analysis. In this work, we present our view of the current situation of computer tools for survival analysis, stressing the need of transferring the latest results in the field of machine learning to biomedical researchers. We propose a web based software for survival analysis called OSA (Online Survival Analysis), which has been developed as an open access and user friendly option to obtain discrete time, predictive survival models at individual level using machine learning techniques, and to perform standard survival analysis. OSA employs an Artificial Neural Network (ANN) based method to produce the predictive survival models. Additionally, the software can easily generate survival and hazard curves with multiple options to personalise the plots, obtain contingency tables from the uploaded data to perform different tests, and fit a Cox regression model from a number of predictor variables. In the Materials and Methods section, we depict the general architecture of the application and introduce the mathematical background of each of the implemented methods. The study concludes with examples of use showing the results obtained with public datasets.
format Online
Article
Text
id pubmed-4988664
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-49886642016-08-29 Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science Montes-Torres, Julio Subirats, José Luis Ribelles, Nuria Urda, Daniel Franco, Leonardo Alba, Emilio Jerez, José Manuel PLoS One Research Article One of the prevailing applications of machine learning is the use of predictive modelling in clinical survival analysis. In this work, we present our view of the current situation of computer tools for survival analysis, stressing the need of transferring the latest results in the field of machine learning to biomedical researchers. We propose a web based software for survival analysis called OSA (Online Survival Analysis), which has been developed as an open access and user friendly option to obtain discrete time, predictive survival models at individual level using machine learning techniques, and to perform standard survival analysis. OSA employs an Artificial Neural Network (ANN) based method to produce the predictive survival models. Additionally, the software can easily generate survival and hazard curves with multiple options to personalise the plots, obtain contingency tables from the uploaded data to perform different tests, and fit a Cox regression model from a number of predictor variables. In the Materials and Methods section, we depict the general architecture of the application and introduce the mathematical background of each of the implemented methods. The study concludes with examples of use showing the results obtained with public datasets. Public Library of Science 2016-08-17 /pmc/articles/PMC4988664/ /pubmed/27532883 http://dx.doi.org/10.1371/journal.pone.0161135 Text en © 2016 Montes-Torres et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Montes-Torres, Julio
Subirats, José Luis
Ribelles, Nuria
Urda, Daniel
Franco, Leonardo
Alba, Emilio
Jerez, José Manuel
Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science
title Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science
title_full Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science
title_fullStr Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science
title_full_unstemmed Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science
title_short Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science
title_sort advanced online survival analysis tool for predictive modelling in clinical data science
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4988664/
https://www.ncbi.nlm.nih.gov/pubmed/27532883
http://dx.doi.org/10.1371/journal.pone.0161135
work_keys_str_mv AT montestorresjulio advancedonlinesurvivalanalysistoolforpredictivemodellinginclinicaldatascience
AT subiratsjoseluis advancedonlinesurvivalanalysistoolforpredictivemodellinginclinicaldatascience
AT ribellesnuria advancedonlinesurvivalanalysistoolforpredictivemodellinginclinicaldatascience
AT urdadaniel advancedonlinesurvivalanalysistoolforpredictivemodellinginclinicaldatascience
AT francoleonardo advancedonlinesurvivalanalysistoolforpredictivemodellinginclinicaldatascience
AT albaemilio advancedonlinesurvivalanalysistoolforpredictivemodellinginclinicaldatascience
AT jerezjosemanuel advancedonlinesurvivalanalysistoolforpredictivemodellinginclinicaldatascience