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Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science
One of the prevailing applications of machine learning is the use of predictive modelling in clinical survival analysis. In this work, we present our view of the current situation of computer tools for survival analysis, stressing the need of transferring the latest results in the field of machine l...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4988664/ https://www.ncbi.nlm.nih.gov/pubmed/27532883 http://dx.doi.org/10.1371/journal.pone.0161135 |
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author | Montes-Torres, Julio Subirats, José Luis Ribelles, Nuria Urda, Daniel Franco, Leonardo Alba, Emilio Jerez, José Manuel |
author_facet | Montes-Torres, Julio Subirats, José Luis Ribelles, Nuria Urda, Daniel Franco, Leonardo Alba, Emilio Jerez, José Manuel |
author_sort | Montes-Torres, Julio |
collection | PubMed |
description | One of the prevailing applications of machine learning is the use of predictive modelling in clinical survival analysis. In this work, we present our view of the current situation of computer tools for survival analysis, stressing the need of transferring the latest results in the field of machine learning to biomedical researchers. We propose a web based software for survival analysis called OSA (Online Survival Analysis), which has been developed as an open access and user friendly option to obtain discrete time, predictive survival models at individual level using machine learning techniques, and to perform standard survival analysis. OSA employs an Artificial Neural Network (ANN) based method to produce the predictive survival models. Additionally, the software can easily generate survival and hazard curves with multiple options to personalise the plots, obtain contingency tables from the uploaded data to perform different tests, and fit a Cox regression model from a number of predictor variables. In the Materials and Methods section, we depict the general architecture of the application and introduce the mathematical background of each of the implemented methods. The study concludes with examples of use showing the results obtained with public datasets. |
format | Online Article Text |
id | pubmed-4988664 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-49886642016-08-29 Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science Montes-Torres, Julio Subirats, José Luis Ribelles, Nuria Urda, Daniel Franco, Leonardo Alba, Emilio Jerez, José Manuel PLoS One Research Article One of the prevailing applications of machine learning is the use of predictive modelling in clinical survival analysis. In this work, we present our view of the current situation of computer tools for survival analysis, stressing the need of transferring the latest results in the field of machine learning to biomedical researchers. We propose a web based software for survival analysis called OSA (Online Survival Analysis), which has been developed as an open access and user friendly option to obtain discrete time, predictive survival models at individual level using machine learning techniques, and to perform standard survival analysis. OSA employs an Artificial Neural Network (ANN) based method to produce the predictive survival models. Additionally, the software can easily generate survival and hazard curves with multiple options to personalise the plots, obtain contingency tables from the uploaded data to perform different tests, and fit a Cox regression model from a number of predictor variables. In the Materials and Methods section, we depict the general architecture of the application and introduce the mathematical background of each of the implemented methods. The study concludes with examples of use showing the results obtained with public datasets. Public Library of Science 2016-08-17 /pmc/articles/PMC4988664/ /pubmed/27532883 http://dx.doi.org/10.1371/journal.pone.0161135 Text en © 2016 Montes-Torres et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Montes-Torres, Julio Subirats, José Luis Ribelles, Nuria Urda, Daniel Franco, Leonardo Alba, Emilio Jerez, José Manuel Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science |
title | Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science |
title_full | Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science |
title_fullStr | Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science |
title_full_unstemmed | Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science |
title_short | Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science |
title_sort | advanced online survival analysis tool for predictive modelling in clinical data science |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4988664/ https://www.ncbi.nlm.nih.gov/pubmed/27532883 http://dx.doi.org/10.1371/journal.pone.0161135 |
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