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Multivendor Spectral-Domain Optical Coherence Tomography Dataset, Observer Annotation Performance Evaluation, and Standardized Evaluation Framework for Intraretinal Cystoid Fluid Segmentation

Development of image analysis and machine learning methods for segmentation of clinically significant pathology in retinal spectral-domain optical coherence tomography (SD-OCT), used in disease detection and prediction, is limited due to the availability of expertly annotated reference data. Retinal...

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Autores principales: Wu, Jing, Philip, Ana-Maria, Podkowinski, Dominika, Gerendas, Bianca S., Langs, Georg, Simader, Christian, Waldstein, Sebastian M., Schmidt-Erfurth, Ursula M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4989130/
https://www.ncbi.nlm.nih.gov/pubmed/27579177
http://dx.doi.org/10.1155/2016/3898750
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author Wu, Jing
Philip, Ana-Maria
Podkowinski, Dominika
Gerendas, Bianca S.
Langs, Georg
Simader, Christian
Waldstein, Sebastian M.
Schmidt-Erfurth, Ursula M.
author_facet Wu, Jing
Philip, Ana-Maria
Podkowinski, Dominika
Gerendas, Bianca S.
Langs, Georg
Simader, Christian
Waldstein, Sebastian M.
Schmidt-Erfurth, Ursula M.
author_sort Wu, Jing
collection PubMed
description Development of image analysis and machine learning methods for segmentation of clinically significant pathology in retinal spectral-domain optical coherence tomography (SD-OCT), used in disease detection and prediction, is limited due to the availability of expertly annotated reference data. Retinal segmentation methods use datasets that either are not publicly available, come from only one device, or use different evaluation methodologies making them difficult to compare. Thus we present and evaluate a multiple expert annotated reference dataset for the problem of intraretinal cystoid fluid (IRF) segmentation, a key indicator in exudative macular disease. In addition, a standardized framework for segmentation accuracy evaluation, applicable to other pathological structures, is presented. Integral to this work is the dataset used which must be fit for purpose for IRF segmentation algorithm training and testing. We describe here a multivendor dataset comprised of 30 scans. Each OCT scan for system training has been annotated by multiple graders using a proprietary system. Evaluation of the intergrader annotations shows a good correlation, thus making the reproducibly annotated scans suitable for the training and validation of image processing and machine learning based segmentation methods. The dataset will be made publicly available in the form of a segmentation Grand Challenge.
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spelling pubmed-49891302016-08-30 Multivendor Spectral-Domain Optical Coherence Tomography Dataset, Observer Annotation Performance Evaluation, and Standardized Evaluation Framework for Intraretinal Cystoid Fluid Segmentation Wu, Jing Philip, Ana-Maria Podkowinski, Dominika Gerendas, Bianca S. Langs, Georg Simader, Christian Waldstein, Sebastian M. Schmidt-Erfurth, Ursula M. J Ophthalmol Research Article Development of image analysis and machine learning methods for segmentation of clinically significant pathology in retinal spectral-domain optical coherence tomography (SD-OCT), used in disease detection and prediction, is limited due to the availability of expertly annotated reference data. Retinal segmentation methods use datasets that either are not publicly available, come from only one device, or use different evaluation methodologies making them difficult to compare. Thus we present and evaluate a multiple expert annotated reference dataset for the problem of intraretinal cystoid fluid (IRF) segmentation, a key indicator in exudative macular disease. In addition, a standardized framework for segmentation accuracy evaluation, applicable to other pathological structures, is presented. Integral to this work is the dataset used which must be fit for purpose for IRF segmentation algorithm training and testing. We describe here a multivendor dataset comprised of 30 scans. Each OCT scan for system training has been annotated by multiple graders using a proprietary system. Evaluation of the intergrader annotations shows a good correlation, thus making the reproducibly annotated scans suitable for the training and validation of image processing and machine learning based segmentation methods. The dataset will be made publicly available in the form of a segmentation Grand Challenge. Hindawi Publishing Corporation 2016 2016-08-04 /pmc/articles/PMC4989130/ /pubmed/27579177 http://dx.doi.org/10.1155/2016/3898750 Text en Copyright © 2016 Jing Wu et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wu, Jing
Philip, Ana-Maria
Podkowinski, Dominika
Gerendas, Bianca S.
Langs, Georg
Simader, Christian
Waldstein, Sebastian M.
Schmidt-Erfurth, Ursula M.
Multivendor Spectral-Domain Optical Coherence Tomography Dataset, Observer Annotation Performance Evaluation, and Standardized Evaluation Framework for Intraretinal Cystoid Fluid Segmentation
title Multivendor Spectral-Domain Optical Coherence Tomography Dataset, Observer Annotation Performance Evaluation, and Standardized Evaluation Framework for Intraretinal Cystoid Fluid Segmentation
title_full Multivendor Spectral-Domain Optical Coherence Tomography Dataset, Observer Annotation Performance Evaluation, and Standardized Evaluation Framework for Intraretinal Cystoid Fluid Segmentation
title_fullStr Multivendor Spectral-Domain Optical Coherence Tomography Dataset, Observer Annotation Performance Evaluation, and Standardized Evaluation Framework for Intraretinal Cystoid Fluid Segmentation
title_full_unstemmed Multivendor Spectral-Domain Optical Coherence Tomography Dataset, Observer Annotation Performance Evaluation, and Standardized Evaluation Framework for Intraretinal Cystoid Fluid Segmentation
title_short Multivendor Spectral-Domain Optical Coherence Tomography Dataset, Observer Annotation Performance Evaluation, and Standardized Evaluation Framework for Intraretinal Cystoid Fluid Segmentation
title_sort multivendor spectral-domain optical coherence tomography dataset, observer annotation performance evaluation, and standardized evaluation framework for intraretinal cystoid fluid segmentation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4989130/
https://www.ncbi.nlm.nih.gov/pubmed/27579177
http://dx.doi.org/10.1155/2016/3898750
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