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A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium
PURPOSE: Noncoding microRNAs (miRNAs) have been implicated in the pathogenesis of glaucoma. We aimed to identify common variants in miRNA coding genes (MIR) associated with primary open-angle glaucoma (POAG). METHODS: Using the NEIGHBORHOOD data set (3853 cases/33,480 controls with European ancestry...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Association for Research in Vision and Ophthalmology
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991020/ https://www.ncbi.nlm.nih.gov/pubmed/27537254 http://dx.doi.org/10.1167/iovs.16-19688 |
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author | Liu, Yutao Bailey, Jessica Cooke Helwa, Inas Dismuke, W. Michael Cai, Jingwen Drewry, Michelle Brilliant, Murray H. Budenz, Donald L. Christen, William G. Chasman, Daniel I. Fingert, John H. Gaasterland, Douglas Gaasterland, Terry Gordon, Mae O. Igo, Robert P. Kang, Jae H. Kass, Michael A. Kraft, Peter Lee, Richard K. Lichter, Paul Moroi, Sayoko E. Realini, Anthony Richards, Julia E. Ritch, Robert Schuman, Joel S. Scott, William K. Singh, Kuldev Sit, Arthur J. Song, Yeunjoo E. Vollrath, Douglas Weinreb, Robert Medeiros, Felipe Wollstein, Gadi Zack, Donald J. Zhang, Kang Pericak-Vance, Margaret A. Gonzalez, Pedro Stamer, W. Daniel Kuchtey, John Kuchtey, Rachel W. Allingham, R. Rand Hauser, Michael A. Pasquale, Louis R. Haines, Jonathan L. Wiggs, Janey L. |
author_facet | Liu, Yutao Bailey, Jessica Cooke Helwa, Inas Dismuke, W. Michael Cai, Jingwen Drewry, Michelle Brilliant, Murray H. Budenz, Donald L. Christen, William G. Chasman, Daniel I. Fingert, John H. Gaasterland, Douglas Gaasterland, Terry Gordon, Mae O. Igo, Robert P. Kang, Jae H. Kass, Michael A. Kraft, Peter Lee, Richard K. Lichter, Paul Moroi, Sayoko E. Realini, Anthony Richards, Julia E. Ritch, Robert Schuman, Joel S. Scott, William K. Singh, Kuldev Sit, Arthur J. Song, Yeunjoo E. Vollrath, Douglas Weinreb, Robert Medeiros, Felipe Wollstein, Gadi Zack, Donald J. Zhang, Kang Pericak-Vance, Margaret A. Gonzalez, Pedro Stamer, W. Daniel Kuchtey, John Kuchtey, Rachel W. Allingham, R. Rand Hauser, Michael A. Pasquale, Louis R. Haines, Jonathan L. Wiggs, Janey L. |
author_sort | Liu, Yutao |
collection | PubMed |
description | PURPOSE: Noncoding microRNAs (miRNAs) have been implicated in the pathogenesis of glaucoma. We aimed to identify common variants in miRNA coding genes (MIR) associated with primary open-angle glaucoma (POAG). METHODS: Using the NEIGHBORHOOD data set (3853 cases/33,480 controls with European ancestry), we first assessed the relation between 85 variants in 76 MIR genes and overall POAG. Subtype-specific analyses were performed in high-tension glaucoma (HTG) and normal-tension glaucoma subsets. Second, we examined the expression of miR-182, which was associated with POAG, in postmortem human ocular tissues (ciliary body, cornea, retina, and trabecular meshwork [TM]), using miRNA sequencing (miRNA-Seq) and droplet digital PCR (ddPCR). Third, miR-182 expression was also examined in human aqueous humor (AH) by using miRNA-Seq. Fourth, exosomes secreted from primary human TM cells were examined for miR-182 expression by using miRNA-Seq. Fifth, using ddPCR we compared miR-182 expression in AH between five HTG cases and five controls. RESULTS: Only rs76481776 in MIR182 gene was associated with POAG after adjustment for multiple comparisons (odds ratio [OR] = 1.23, 95% confidence interval [CI]: 1.11–1.42, P = 0.0002). Subtype analysis indicated that the association was primarily in the HTG subset (OR = 1.26, 95% CI: 1.08–1.47, P = 0.004). The risk allele T has been associated with elevated miR-182 expression in vitro. Data from ddPCR and miRNA-Seq confirmed miR-182 expression in all examined ocular tissues and TM-derived exosomes. Interestingly, miR-182 expression in AH was 2-fold higher in HTG patients than nonglaucoma controls (P = 0.03) without controlling for medication treatment. CONCLUSIONS: Our integrative study is the first to associate rs76481776 with POAG via elevated miR-182 expression. |
format | Online Article Text |
id | pubmed-4991020 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | The Association for Research in Vision and Ophthalmology |
record_format | MEDLINE/PubMed |
spelling | pubmed-49910202016-09-19 A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium Liu, Yutao Bailey, Jessica Cooke Helwa, Inas Dismuke, W. Michael Cai, Jingwen Drewry, Michelle Brilliant, Murray H. Budenz, Donald L. Christen, William G. Chasman, Daniel I. Fingert, John H. Gaasterland, Douglas Gaasterland, Terry Gordon, Mae O. Igo, Robert P. Kang, Jae H. Kass, Michael A. Kraft, Peter Lee, Richard K. Lichter, Paul Moroi, Sayoko E. Realini, Anthony Richards, Julia E. Ritch, Robert Schuman, Joel S. Scott, William K. Singh, Kuldev Sit, Arthur J. Song, Yeunjoo E. Vollrath, Douglas Weinreb, Robert Medeiros, Felipe Wollstein, Gadi Zack, Donald J. Zhang, Kang Pericak-Vance, Margaret A. Gonzalez, Pedro Stamer, W. Daniel Kuchtey, John Kuchtey, Rachel W. Allingham, R. Rand Hauser, Michael A. Pasquale, Louis R. Haines, Jonathan L. Wiggs, Janey L. Invest Ophthalmol Vis Sci Genetics PURPOSE: Noncoding microRNAs (miRNAs) have been implicated in the pathogenesis of glaucoma. We aimed to identify common variants in miRNA coding genes (MIR) associated with primary open-angle glaucoma (POAG). METHODS: Using the NEIGHBORHOOD data set (3853 cases/33,480 controls with European ancestry), we first assessed the relation between 85 variants in 76 MIR genes and overall POAG. Subtype-specific analyses were performed in high-tension glaucoma (HTG) and normal-tension glaucoma subsets. Second, we examined the expression of miR-182, which was associated with POAG, in postmortem human ocular tissues (ciliary body, cornea, retina, and trabecular meshwork [TM]), using miRNA sequencing (miRNA-Seq) and droplet digital PCR (ddPCR). Third, miR-182 expression was also examined in human aqueous humor (AH) by using miRNA-Seq. Fourth, exosomes secreted from primary human TM cells were examined for miR-182 expression by using miRNA-Seq. Fifth, using ddPCR we compared miR-182 expression in AH between five HTG cases and five controls. RESULTS: Only rs76481776 in MIR182 gene was associated with POAG after adjustment for multiple comparisons (odds ratio [OR] = 1.23, 95% confidence interval [CI]: 1.11–1.42, P = 0.0002). Subtype analysis indicated that the association was primarily in the HTG subset (OR = 1.26, 95% CI: 1.08–1.47, P = 0.004). The risk allele T has been associated with elevated miR-182 expression in vitro. Data from ddPCR and miRNA-Seq confirmed miR-182 expression in all examined ocular tissues and TM-derived exosomes. Interestingly, miR-182 expression in AH was 2-fold higher in HTG patients than nonglaucoma controls (P = 0.03) without controlling for medication treatment. CONCLUSIONS: Our integrative study is the first to associate rs76481776 with POAG via elevated miR-182 expression. The Association for Research in Vision and Ophthalmology 2016-08 /pmc/articles/PMC4991020/ /pubmed/27537254 http://dx.doi.org/10.1167/iovs.16-19688 Text en http://creativecommons.org/licenses/by-nc-nd/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. |
spellingShingle | Genetics Liu, Yutao Bailey, Jessica Cooke Helwa, Inas Dismuke, W. Michael Cai, Jingwen Drewry, Michelle Brilliant, Murray H. Budenz, Donald L. Christen, William G. Chasman, Daniel I. Fingert, John H. Gaasterland, Douglas Gaasterland, Terry Gordon, Mae O. Igo, Robert P. Kang, Jae H. Kass, Michael A. Kraft, Peter Lee, Richard K. Lichter, Paul Moroi, Sayoko E. Realini, Anthony Richards, Julia E. Ritch, Robert Schuman, Joel S. Scott, William K. Singh, Kuldev Sit, Arthur J. Song, Yeunjoo E. Vollrath, Douglas Weinreb, Robert Medeiros, Felipe Wollstein, Gadi Zack, Donald J. Zhang, Kang Pericak-Vance, Margaret A. Gonzalez, Pedro Stamer, W. Daniel Kuchtey, John Kuchtey, Rachel W. Allingham, R. Rand Hauser, Michael A. Pasquale, Louis R. Haines, Jonathan L. Wiggs, Janey L. A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium |
title | A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium |
title_full | A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium |
title_fullStr | A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium |
title_full_unstemmed | A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium |
title_short | A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium |
title_sort | common variant in mir182 is associated with primary open-angle glaucoma in the neighborhood consortium |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991020/ https://www.ncbi.nlm.nih.gov/pubmed/27537254 http://dx.doi.org/10.1167/iovs.16-19688 |
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