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The health care and life sciences community profile for dataset descriptions

Access to consistent, high-quality metadata is critical to finding, understanding, and reusing scientific data. However, while there are many relevant vocabularies for the annotation of a dataset, none sufficiently captures all the necessary metadata. This prevents uniform indexing and querying of d...

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Autores principales: Dumontier, Michel, Gray, Alasdair J.G., Marshall, M. Scott, Alexiev, Vladimir, Ansell, Peter, Bader, Gary, Baran, Joachim, Bolleman, Jerven T., Callahan, Alison, Cruz-Toledo, José, Gaudet, Pascale, Gombocz, Erich A., Gonzalez-Beltran, Alejandra N., Groth, Paul, Haendel, Melissa, Ito, Maori, Jupp, Simon, Juty, Nick, Katayama, Toshiaki, Kobayashi, Norio, Krishnaswami, Kalpana, Laibe, Camille, Le Novère, Nicolas, Lin, Simon, Malone, James, Miller, Michael, Mungall, Christopher J., Rietveld, Laurens, Wimalaratne, Sarala M., Yamaguchi, Atsuko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991880/
https://www.ncbi.nlm.nih.gov/pubmed/27602295
http://dx.doi.org/10.7717/peerj.2331
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author Dumontier, Michel
Gray, Alasdair J.G.
Marshall, M. Scott
Alexiev, Vladimir
Ansell, Peter
Bader, Gary
Baran, Joachim
Bolleman, Jerven T.
Callahan, Alison
Cruz-Toledo, José
Gaudet, Pascale
Gombocz, Erich A.
Gonzalez-Beltran, Alejandra N.
Groth, Paul
Haendel, Melissa
Ito, Maori
Jupp, Simon
Juty, Nick
Katayama, Toshiaki
Kobayashi, Norio
Krishnaswami, Kalpana
Laibe, Camille
Le Novère, Nicolas
Lin, Simon
Malone, James
Miller, Michael
Mungall, Christopher J.
Rietveld, Laurens
Wimalaratne, Sarala M.
Yamaguchi, Atsuko
author_facet Dumontier, Michel
Gray, Alasdair J.G.
Marshall, M. Scott
Alexiev, Vladimir
Ansell, Peter
Bader, Gary
Baran, Joachim
Bolleman, Jerven T.
Callahan, Alison
Cruz-Toledo, José
Gaudet, Pascale
Gombocz, Erich A.
Gonzalez-Beltran, Alejandra N.
Groth, Paul
Haendel, Melissa
Ito, Maori
Jupp, Simon
Juty, Nick
Katayama, Toshiaki
Kobayashi, Norio
Krishnaswami, Kalpana
Laibe, Camille
Le Novère, Nicolas
Lin, Simon
Malone, James
Miller, Michael
Mungall, Christopher J.
Rietveld, Laurens
Wimalaratne, Sarala M.
Yamaguchi, Atsuko
author_sort Dumontier, Michel
collection PubMed
description Access to consistent, high-quality metadata is critical to finding, understanding, and reusing scientific data. However, while there are many relevant vocabularies for the annotation of a dataset, none sufficiently captures all the necessary metadata. This prevents uniform indexing and querying of dataset repositories. Towards providing a practical guide for producing a high quality description of biomedical datasets, the W3C Semantic Web for Health Care and the Life Sciences Interest Group (HCLSIG) identified Resource Description Framework (RDF) vocabularies that could be used to specify common metadata elements and their value sets. The resulting guideline covers elements of description, identification, attribution, versioning, provenance, and content summarization. This guideline reuses existing vocabularies, and is intended to meet key functional requirements including indexing, discovery, exchange, query, and retrieval of datasets, thereby enabling the publication of FAIR data. The resulting metadata profile is generic and could be used by other domains with an interest in providing machine readable descriptions of versioned datasets.
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spelling pubmed-49918802016-09-06 The health care and life sciences community profile for dataset descriptions Dumontier, Michel Gray, Alasdair J.G. Marshall, M. Scott Alexiev, Vladimir Ansell, Peter Bader, Gary Baran, Joachim Bolleman, Jerven T. Callahan, Alison Cruz-Toledo, José Gaudet, Pascale Gombocz, Erich A. Gonzalez-Beltran, Alejandra N. Groth, Paul Haendel, Melissa Ito, Maori Jupp, Simon Juty, Nick Katayama, Toshiaki Kobayashi, Norio Krishnaswami, Kalpana Laibe, Camille Le Novère, Nicolas Lin, Simon Malone, James Miller, Michael Mungall, Christopher J. Rietveld, Laurens Wimalaratne, Sarala M. Yamaguchi, Atsuko PeerJ Bioinformatics Access to consistent, high-quality metadata is critical to finding, understanding, and reusing scientific data. However, while there are many relevant vocabularies for the annotation of a dataset, none sufficiently captures all the necessary metadata. This prevents uniform indexing and querying of dataset repositories. Towards providing a practical guide for producing a high quality description of biomedical datasets, the W3C Semantic Web for Health Care and the Life Sciences Interest Group (HCLSIG) identified Resource Description Framework (RDF) vocabularies that could be used to specify common metadata elements and their value sets. The resulting guideline covers elements of description, identification, attribution, versioning, provenance, and content summarization. This guideline reuses existing vocabularies, and is intended to meet key functional requirements including indexing, discovery, exchange, query, and retrieval of datasets, thereby enabling the publication of FAIR data. The resulting metadata profile is generic and could be used by other domains with an interest in providing machine readable descriptions of versioned datasets. PeerJ Inc. 2016-08-16 /pmc/articles/PMC4991880/ /pubmed/27602295 http://dx.doi.org/10.7717/peerj.2331 Text en ©2016 Dumontier et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Dumontier, Michel
Gray, Alasdair J.G.
Marshall, M. Scott
Alexiev, Vladimir
Ansell, Peter
Bader, Gary
Baran, Joachim
Bolleman, Jerven T.
Callahan, Alison
Cruz-Toledo, José
Gaudet, Pascale
Gombocz, Erich A.
Gonzalez-Beltran, Alejandra N.
Groth, Paul
Haendel, Melissa
Ito, Maori
Jupp, Simon
Juty, Nick
Katayama, Toshiaki
Kobayashi, Norio
Krishnaswami, Kalpana
Laibe, Camille
Le Novère, Nicolas
Lin, Simon
Malone, James
Miller, Michael
Mungall, Christopher J.
Rietveld, Laurens
Wimalaratne, Sarala M.
Yamaguchi, Atsuko
The health care and life sciences community profile for dataset descriptions
title The health care and life sciences community profile for dataset descriptions
title_full The health care and life sciences community profile for dataset descriptions
title_fullStr The health care and life sciences community profile for dataset descriptions
title_full_unstemmed The health care and life sciences community profile for dataset descriptions
title_short The health care and life sciences community profile for dataset descriptions
title_sort health care and life sciences community profile for dataset descriptions
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991880/
https://www.ncbi.nlm.nih.gov/pubmed/27602295
http://dx.doi.org/10.7717/peerj.2331
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