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The health care and life sciences community profile for dataset descriptions
Access to consistent, high-quality metadata is critical to finding, understanding, and reusing scientific data. However, while there are many relevant vocabularies for the annotation of a dataset, none sufficiently captures all the necessary metadata. This prevents uniform indexing and querying of d...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991880/ https://www.ncbi.nlm.nih.gov/pubmed/27602295 http://dx.doi.org/10.7717/peerj.2331 |
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author | Dumontier, Michel Gray, Alasdair J.G. Marshall, M. Scott Alexiev, Vladimir Ansell, Peter Bader, Gary Baran, Joachim Bolleman, Jerven T. Callahan, Alison Cruz-Toledo, José Gaudet, Pascale Gombocz, Erich A. Gonzalez-Beltran, Alejandra N. Groth, Paul Haendel, Melissa Ito, Maori Jupp, Simon Juty, Nick Katayama, Toshiaki Kobayashi, Norio Krishnaswami, Kalpana Laibe, Camille Le Novère, Nicolas Lin, Simon Malone, James Miller, Michael Mungall, Christopher J. Rietveld, Laurens Wimalaratne, Sarala M. Yamaguchi, Atsuko |
author_facet | Dumontier, Michel Gray, Alasdair J.G. Marshall, M. Scott Alexiev, Vladimir Ansell, Peter Bader, Gary Baran, Joachim Bolleman, Jerven T. Callahan, Alison Cruz-Toledo, José Gaudet, Pascale Gombocz, Erich A. Gonzalez-Beltran, Alejandra N. Groth, Paul Haendel, Melissa Ito, Maori Jupp, Simon Juty, Nick Katayama, Toshiaki Kobayashi, Norio Krishnaswami, Kalpana Laibe, Camille Le Novère, Nicolas Lin, Simon Malone, James Miller, Michael Mungall, Christopher J. Rietveld, Laurens Wimalaratne, Sarala M. Yamaguchi, Atsuko |
author_sort | Dumontier, Michel |
collection | PubMed |
description | Access to consistent, high-quality metadata is critical to finding, understanding, and reusing scientific data. However, while there are many relevant vocabularies for the annotation of a dataset, none sufficiently captures all the necessary metadata. This prevents uniform indexing and querying of dataset repositories. Towards providing a practical guide for producing a high quality description of biomedical datasets, the W3C Semantic Web for Health Care and the Life Sciences Interest Group (HCLSIG) identified Resource Description Framework (RDF) vocabularies that could be used to specify common metadata elements and their value sets. The resulting guideline covers elements of description, identification, attribution, versioning, provenance, and content summarization. This guideline reuses existing vocabularies, and is intended to meet key functional requirements including indexing, discovery, exchange, query, and retrieval of datasets, thereby enabling the publication of FAIR data. The resulting metadata profile is generic and could be used by other domains with an interest in providing machine readable descriptions of versioned datasets. |
format | Online Article Text |
id | pubmed-4991880 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-49918802016-09-06 The health care and life sciences community profile for dataset descriptions Dumontier, Michel Gray, Alasdair J.G. Marshall, M. Scott Alexiev, Vladimir Ansell, Peter Bader, Gary Baran, Joachim Bolleman, Jerven T. Callahan, Alison Cruz-Toledo, José Gaudet, Pascale Gombocz, Erich A. Gonzalez-Beltran, Alejandra N. Groth, Paul Haendel, Melissa Ito, Maori Jupp, Simon Juty, Nick Katayama, Toshiaki Kobayashi, Norio Krishnaswami, Kalpana Laibe, Camille Le Novère, Nicolas Lin, Simon Malone, James Miller, Michael Mungall, Christopher J. Rietveld, Laurens Wimalaratne, Sarala M. Yamaguchi, Atsuko PeerJ Bioinformatics Access to consistent, high-quality metadata is critical to finding, understanding, and reusing scientific data. However, while there are many relevant vocabularies for the annotation of a dataset, none sufficiently captures all the necessary metadata. This prevents uniform indexing and querying of dataset repositories. Towards providing a practical guide for producing a high quality description of biomedical datasets, the W3C Semantic Web for Health Care and the Life Sciences Interest Group (HCLSIG) identified Resource Description Framework (RDF) vocabularies that could be used to specify common metadata elements and their value sets. The resulting guideline covers elements of description, identification, attribution, versioning, provenance, and content summarization. This guideline reuses existing vocabularies, and is intended to meet key functional requirements including indexing, discovery, exchange, query, and retrieval of datasets, thereby enabling the publication of FAIR data. The resulting metadata profile is generic and could be used by other domains with an interest in providing machine readable descriptions of versioned datasets. PeerJ Inc. 2016-08-16 /pmc/articles/PMC4991880/ /pubmed/27602295 http://dx.doi.org/10.7717/peerj.2331 Text en ©2016 Dumontier et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Dumontier, Michel Gray, Alasdair J.G. Marshall, M. Scott Alexiev, Vladimir Ansell, Peter Bader, Gary Baran, Joachim Bolleman, Jerven T. Callahan, Alison Cruz-Toledo, José Gaudet, Pascale Gombocz, Erich A. Gonzalez-Beltran, Alejandra N. Groth, Paul Haendel, Melissa Ito, Maori Jupp, Simon Juty, Nick Katayama, Toshiaki Kobayashi, Norio Krishnaswami, Kalpana Laibe, Camille Le Novère, Nicolas Lin, Simon Malone, James Miller, Michael Mungall, Christopher J. Rietveld, Laurens Wimalaratne, Sarala M. Yamaguchi, Atsuko The health care and life sciences community profile for dataset descriptions |
title | The health care and life sciences community profile for dataset descriptions |
title_full | The health care and life sciences community profile for dataset descriptions |
title_fullStr | The health care and life sciences community profile for dataset descriptions |
title_full_unstemmed | The health care and life sciences community profile for dataset descriptions |
title_short | The health care and life sciences community profile for dataset descriptions |
title_sort | health care and life sciences community profile for dataset descriptions |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991880/ https://www.ncbi.nlm.nih.gov/pubmed/27602295 http://dx.doi.org/10.7717/peerj.2331 |
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