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Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical...

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Autores principales: Ho, Adrian, Angel, Roey, Veraart, Annelies J., Daebeler, Anne, Jia, Zhongjun, Kim, Sang Yoon, Kerckhof, Frederiek-Maarten, Boon, Nico, Bodelier, Paul L. E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993757/
https://www.ncbi.nlm.nih.gov/pubmed/27602021
http://dx.doi.org/10.3389/fmicb.2016.01285
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author Ho, Adrian
Angel, Roey
Veraart, Annelies J.
Daebeler, Anne
Jia, Zhongjun
Kim, Sang Yoon
Kerckhof, Frederiek-Maarten
Boon, Nico
Bodelier, Paul L. E.
author_facet Ho, Adrian
Angel, Roey
Veraart, Annelies J.
Daebeler, Anne
Jia, Zhongjun
Kim, Sang Yoon
Kerckhof, Frederiek-Maarten
Boon, Nico
Bodelier, Paul L. E.
author_sort Ho, Adrian
collection PubMed
description Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes.
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spelling pubmed-49937572016-09-06 Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System Ho, Adrian Angel, Roey Veraart, Annelies J. Daebeler, Anne Jia, Zhongjun Kim, Sang Yoon Kerckhof, Frederiek-Maarten Boon, Nico Bodelier, Paul L. E. Front Microbiol Microbiology Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes. Frontiers Media S.A. 2016-08-23 /pmc/articles/PMC4993757/ /pubmed/27602021 http://dx.doi.org/10.3389/fmicb.2016.01285 Text en Copyright © 2016 Ho, Angel, Veraart, Daebeler, Jia, Kim, Kerckhof, Boon and Bodelier. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Ho, Adrian
Angel, Roey
Veraart, Annelies J.
Daebeler, Anne
Jia, Zhongjun
Kim, Sang Yoon
Kerckhof, Frederiek-Maarten
Boon, Nico
Bodelier, Paul L. E.
Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System
title Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System
title_full Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System
title_fullStr Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System
title_full_unstemmed Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System
title_short Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System
title_sort biotic interactions in microbial communities as modulators of biogeochemical processes: methanotrophy as a model system
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993757/
https://www.ncbi.nlm.nih.gov/pubmed/27602021
http://dx.doi.org/10.3389/fmicb.2016.01285
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