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Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential

Pseudomonas moraviensis is a predominant member of soil environments. We here report on the genomic analysis of Pseudomonas moraviensis strain Devor that was isolated from a gate at Oklahoma State University, Stillwater, OK, USA. The partial genome of Pseudomonas moraviensis strain Devor consists of...

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Autores principales: Miller, Neil T., Fuller, Danny, Couger, M.B., Bagazinski, Mark, Boyne, Philip, Devor, Robert C., Hanafy, Radwa A., Budd, Connie, French, Donald P., Hoff, Wouter D., Youssef, Noha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993851/
https://www.ncbi.nlm.nih.gov/pubmed/27583206
http://dx.doi.org/10.1016/j.gdata.2016.08.004
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author Miller, Neil T.
Fuller, Danny
Couger, M.B.
Bagazinski, Mark
Boyne, Philip
Devor, Robert C.
Hanafy, Radwa A.
Budd, Connie
French, Donald P.
Hoff, Wouter D.
Youssef, Noha
author_facet Miller, Neil T.
Fuller, Danny
Couger, M.B.
Bagazinski, Mark
Boyne, Philip
Devor, Robert C.
Hanafy, Radwa A.
Budd, Connie
French, Donald P.
Hoff, Wouter D.
Youssef, Noha
author_sort Miller, Neil T.
collection PubMed
description Pseudomonas moraviensis is a predominant member of soil environments. We here report on the genomic analysis of Pseudomonas moraviensis strain Devor that was isolated from a gate at Oklahoma State University, Stillwater, OK, USA. The partial genome of Pseudomonas moraviensis strain Devor consists of 6016489 bp of DNA with 5290 protein-coding genes and 66 RNA genes. This is the first detailed analysis of a P. moraviensis genome. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of fructose, xylose, mannose and all amino acids with the exception of tryptophan and valine, implying that the organism is a versatile heterotroph. The genome of P. moraviensis strain Devor was rich in transporters and, based on COG analysis, did not cluster closely with P. moraviensis R28-S genome, the only previous report of a P. moraviensis genome with a native mercury resistance plasmid.
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spelling pubmed-49938512016-08-31 Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential Miller, Neil T. Fuller, Danny Couger, M.B. Bagazinski, Mark Boyne, Philip Devor, Robert C. Hanafy, Radwa A. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha Genom Data Regular Article Pseudomonas moraviensis is a predominant member of soil environments. We here report on the genomic analysis of Pseudomonas moraviensis strain Devor that was isolated from a gate at Oklahoma State University, Stillwater, OK, USA. The partial genome of Pseudomonas moraviensis strain Devor consists of 6016489 bp of DNA with 5290 protein-coding genes and 66 RNA genes. This is the first detailed analysis of a P. moraviensis genome. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of fructose, xylose, mannose and all amino acids with the exception of tryptophan and valine, implying that the organism is a versatile heterotroph. The genome of P. moraviensis strain Devor was rich in transporters and, based on COG analysis, did not cluster closely with P. moraviensis R28-S genome, the only previous report of a P. moraviensis genome with a native mercury resistance plasmid. Elsevier 2016-08-04 /pmc/articles/PMC4993851/ /pubmed/27583206 http://dx.doi.org/10.1016/j.gdata.2016.08.004 Text en © 2016 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Regular Article
Miller, Neil T.
Fuller, Danny
Couger, M.B.
Bagazinski, Mark
Boyne, Philip
Devor, Robert C.
Hanafy, Radwa A.
Budd, Connie
French, Donald P.
Hoff, Wouter D.
Youssef, Noha
Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential
title Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential
title_full Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential
title_fullStr Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential
title_full_unstemmed Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential
title_short Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential
title_sort draft genome sequence of pseudomonas moraviensis strain devor implicates metabolic versatility and bioremediation potential
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993851/
https://www.ncbi.nlm.nih.gov/pubmed/27583206
http://dx.doi.org/10.1016/j.gdata.2016.08.004
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