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Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential
Pseudomonas moraviensis is a predominant member of soil environments. We here report on the genomic analysis of Pseudomonas moraviensis strain Devor that was isolated from a gate at Oklahoma State University, Stillwater, OK, USA. The partial genome of Pseudomonas moraviensis strain Devor consists of...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993851/ https://www.ncbi.nlm.nih.gov/pubmed/27583206 http://dx.doi.org/10.1016/j.gdata.2016.08.004 |
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author | Miller, Neil T. Fuller, Danny Couger, M.B. Bagazinski, Mark Boyne, Philip Devor, Robert C. Hanafy, Radwa A. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha |
author_facet | Miller, Neil T. Fuller, Danny Couger, M.B. Bagazinski, Mark Boyne, Philip Devor, Robert C. Hanafy, Radwa A. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha |
author_sort | Miller, Neil T. |
collection | PubMed |
description | Pseudomonas moraviensis is a predominant member of soil environments. We here report on the genomic analysis of Pseudomonas moraviensis strain Devor that was isolated from a gate at Oklahoma State University, Stillwater, OK, USA. The partial genome of Pseudomonas moraviensis strain Devor consists of 6016489 bp of DNA with 5290 protein-coding genes and 66 RNA genes. This is the first detailed analysis of a P. moraviensis genome. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of fructose, xylose, mannose and all amino acids with the exception of tryptophan and valine, implying that the organism is a versatile heterotroph. The genome of P. moraviensis strain Devor was rich in transporters and, based on COG analysis, did not cluster closely with P. moraviensis R28-S genome, the only previous report of a P. moraviensis genome with a native mercury resistance plasmid. |
format | Online Article Text |
id | pubmed-4993851 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-49938512016-08-31 Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential Miller, Neil T. Fuller, Danny Couger, M.B. Bagazinski, Mark Boyne, Philip Devor, Robert C. Hanafy, Radwa A. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha Genom Data Regular Article Pseudomonas moraviensis is a predominant member of soil environments. We here report on the genomic analysis of Pseudomonas moraviensis strain Devor that was isolated from a gate at Oklahoma State University, Stillwater, OK, USA. The partial genome of Pseudomonas moraviensis strain Devor consists of 6016489 bp of DNA with 5290 protein-coding genes and 66 RNA genes. This is the first detailed analysis of a P. moraviensis genome. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of fructose, xylose, mannose and all amino acids with the exception of tryptophan and valine, implying that the organism is a versatile heterotroph. The genome of P. moraviensis strain Devor was rich in transporters and, based on COG analysis, did not cluster closely with P. moraviensis R28-S genome, the only previous report of a P. moraviensis genome with a native mercury resistance plasmid. Elsevier 2016-08-04 /pmc/articles/PMC4993851/ /pubmed/27583206 http://dx.doi.org/10.1016/j.gdata.2016.08.004 Text en © 2016 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Regular Article Miller, Neil T. Fuller, Danny Couger, M.B. Bagazinski, Mark Boyne, Philip Devor, Robert C. Hanafy, Radwa A. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
title | Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
title_full | Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
title_fullStr | Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
title_full_unstemmed | Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
title_short | Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential |
title_sort | draft genome sequence of pseudomonas moraviensis strain devor implicates metabolic versatility and bioremediation potential |
topic | Regular Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993851/ https://www.ncbi.nlm.nih.gov/pubmed/27583206 http://dx.doi.org/10.1016/j.gdata.2016.08.004 |
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