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Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
Micrococcus luteus is a predominant member of skin microbiome. We here report on the genomic analysis of Micrococcus luteus strain O'Kane that was isolated from an elevator. The partial genome assembly of Micrococcus luteus strain O'Kane is 2.5 Mb with 2256 protein-coding genes and 62 RNA...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993860/ https://www.ncbi.nlm.nih.gov/pubmed/27583205 http://dx.doi.org/10.1016/j.gdata.2016.08.006 |
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author | Hanafy, Radwa A. Couger, M.B. Baker, Kristina Murphy, Chelsea O'Kane, Shannon D. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha |
author_facet | Hanafy, Radwa A. Couger, M.B. Baker, Kristina Murphy, Chelsea O'Kane, Shannon D. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha |
author_sort | Hanafy, Radwa A. |
collection | PubMed |
description | Micrococcus luteus is a predominant member of skin microbiome. We here report on the genomic analysis of Micrococcus luteus strain O'Kane that was isolated from an elevator. The partial genome assembly of Micrococcus luteus strain O'Kane is 2.5 Mb with 2256 protein-coding genes and 62 RNA genes. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of glucose, galactose, fructose, mannose, alanine, aspartate, asparagine, glutamate, glutamine, glycine, serine, cysteine, methionine, arginine, proline, histidine, phenylalanine, and fatty acids. Genomic comparison to other M. luteus representatives identified the potential to degrade polyhydroxybutyrates, as well as several antibiotic resistance genes absent from other genomes. |
format | Online Article Text |
id | pubmed-4993860 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-49938602016-08-31 Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates Hanafy, Radwa A. Couger, M.B. Baker, Kristina Murphy, Chelsea O'Kane, Shannon D. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha Genom Data Regular Article Micrococcus luteus is a predominant member of skin microbiome. We here report on the genomic analysis of Micrococcus luteus strain O'Kane that was isolated from an elevator. The partial genome assembly of Micrococcus luteus strain O'Kane is 2.5 Mb with 2256 protein-coding genes and 62 RNA genes. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of glucose, galactose, fructose, mannose, alanine, aspartate, asparagine, glutamate, glutamine, glycine, serine, cysteine, methionine, arginine, proline, histidine, phenylalanine, and fatty acids. Genomic comparison to other M. luteus representatives identified the potential to degrade polyhydroxybutyrates, as well as several antibiotic resistance genes absent from other genomes. Elsevier 2016-08-08 /pmc/articles/PMC4993860/ /pubmed/27583205 http://dx.doi.org/10.1016/j.gdata.2016.08.006 Text en © 2016 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Regular Article Hanafy, Radwa A. Couger, M.B. Baker, Kristina Murphy, Chelsea O'Kane, Shannon D. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates |
title | Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates |
title_full | Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates |
title_fullStr | Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates |
title_full_unstemmed | Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates |
title_short | Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates |
title_sort | draft genome sequence of micrococcus luteus strain o'kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates |
topic | Regular Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993860/ https://www.ncbi.nlm.nih.gov/pubmed/27583205 http://dx.doi.org/10.1016/j.gdata.2016.08.006 |
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