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Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates

Micrococcus luteus is a predominant member of skin microbiome. We here report on the genomic analysis of Micrococcus luteus strain O'Kane that was isolated from an elevator. The partial genome assembly of Micrococcus luteus strain O'Kane is 2.5 Mb with 2256 protein-coding genes and 62 RNA...

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Detalles Bibliográficos
Autores principales: Hanafy, Radwa A., Couger, M.B., Baker, Kristina, Murphy, Chelsea, O'Kane, Shannon D., Budd, Connie, French, Donald P., Hoff, Wouter D., Youssef, Noha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993860/
https://www.ncbi.nlm.nih.gov/pubmed/27583205
http://dx.doi.org/10.1016/j.gdata.2016.08.006
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author Hanafy, Radwa A.
Couger, M.B.
Baker, Kristina
Murphy, Chelsea
O'Kane, Shannon D.
Budd, Connie
French, Donald P.
Hoff, Wouter D.
Youssef, Noha
author_facet Hanafy, Radwa A.
Couger, M.B.
Baker, Kristina
Murphy, Chelsea
O'Kane, Shannon D.
Budd, Connie
French, Donald P.
Hoff, Wouter D.
Youssef, Noha
author_sort Hanafy, Radwa A.
collection PubMed
description Micrococcus luteus is a predominant member of skin microbiome. We here report on the genomic analysis of Micrococcus luteus strain O'Kane that was isolated from an elevator. The partial genome assembly of Micrococcus luteus strain O'Kane is 2.5 Mb with 2256 protein-coding genes and 62 RNA genes. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of glucose, galactose, fructose, mannose, alanine, aspartate, asparagine, glutamate, glutamine, glycine, serine, cysteine, methionine, arginine, proline, histidine, phenylalanine, and fatty acids. Genomic comparison to other M. luteus representatives identified the potential to degrade polyhydroxybutyrates, as well as several antibiotic resistance genes absent from other genomes.
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spelling pubmed-49938602016-08-31 Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates Hanafy, Radwa A. Couger, M.B. Baker, Kristina Murphy, Chelsea O'Kane, Shannon D. Budd, Connie French, Donald P. Hoff, Wouter D. Youssef, Noha Genom Data Regular Article Micrococcus luteus is a predominant member of skin microbiome. We here report on the genomic analysis of Micrococcus luteus strain O'Kane that was isolated from an elevator. The partial genome assembly of Micrococcus luteus strain O'Kane is 2.5 Mb with 2256 protein-coding genes and 62 RNA genes. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of glucose, galactose, fructose, mannose, alanine, aspartate, asparagine, glutamate, glutamine, glycine, serine, cysteine, methionine, arginine, proline, histidine, phenylalanine, and fatty acids. Genomic comparison to other M. luteus representatives identified the potential to degrade polyhydroxybutyrates, as well as several antibiotic resistance genes absent from other genomes. Elsevier 2016-08-08 /pmc/articles/PMC4993860/ /pubmed/27583205 http://dx.doi.org/10.1016/j.gdata.2016.08.006 Text en © 2016 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Regular Article
Hanafy, Radwa A.
Couger, M.B.
Baker, Kristina
Murphy, Chelsea
O'Kane, Shannon D.
Budd, Connie
French, Donald P.
Hoff, Wouter D.
Youssef, Noha
Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
title Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
title_full Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
title_fullStr Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
title_full_unstemmed Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
title_short Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
title_sort draft genome sequence of micrococcus luteus strain o'kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993860/
https://www.ncbi.nlm.nih.gov/pubmed/27583205
http://dx.doi.org/10.1016/j.gdata.2016.08.006
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