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Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function

Glutamate-like receptors (GLRs) is a highly conserved family of ligand-gated ion channels, which have been associated with various physiological and developmental processes. Here, we investigated the evolutionary pattern of GLRs in plants. We observed that tandem duplications occupied the largest pr...

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Autores principales: Chen, Jianqing, Jing, Yinghui, Zhang, Xinyue, Li, Leiting, Wang, Peng, Zhang, Shaoling, Zhou, Hongsheng, Wu, Juyou
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4995503/
https://www.ncbi.nlm.nih.gov/pubmed/27554066
http://dx.doi.org/10.1038/srep32013
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author Chen, Jianqing
Jing, Yinghui
Zhang, Xinyue
Li, Leiting
Wang, Peng
Zhang, Shaoling
Zhou, Hongsheng
Wu, Juyou
author_facet Chen, Jianqing
Jing, Yinghui
Zhang, Xinyue
Li, Leiting
Wang, Peng
Zhang, Shaoling
Zhou, Hongsheng
Wu, Juyou
author_sort Chen, Jianqing
collection PubMed
description Glutamate-like receptors (GLRs) is a highly conserved family of ligand-gated ion channels, which have been associated with various physiological and developmental processes. Here, we investigated the evolutionary pattern of GLRs in plants. We observed that tandem duplications occupied the largest proportion of the plant GLR gene family expansion. Based on a phylogenetic tree, we suggested a new subfamily, GLR4, which is widespread in angiosperm but absence on Brassicales. Meanwhile, because GLR1 and GLR2 subfamilies were potential sister clades, we combined them into the GLR1&2 subfamily. A comparative analysis of plant GLR subfamilies revealed that selective forces shaped the GLR1&2 repertoires in the stems of eudicotyledons with distinct functional preferences. Moreover, GLR1&2 formed a species-specific highwoody-expanded subfamily, with preferential expression in the cambial-enriched and shoot apical meristem fractions of the highwood species. Together, these findings lay the foundation for evolutionary analysis of plant GLRs over the entire plant timescale and identified unique targets for manipulating the woody-growth behaviours of plant GLRs.
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spelling pubmed-49955032016-08-30 Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function Chen, Jianqing Jing, Yinghui Zhang, Xinyue Li, Leiting Wang, Peng Zhang, Shaoling Zhou, Hongsheng Wu, Juyou Sci Rep Article Glutamate-like receptors (GLRs) is a highly conserved family of ligand-gated ion channels, which have been associated with various physiological and developmental processes. Here, we investigated the evolutionary pattern of GLRs in plants. We observed that tandem duplications occupied the largest proportion of the plant GLR gene family expansion. Based on a phylogenetic tree, we suggested a new subfamily, GLR4, which is widespread in angiosperm but absence on Brassicales. Meanwhile, because GLR1 and GLR2 subfamilies were potential sister clades, we combined them into the GLR1&2 subfamily. A comparative analysis of plant GLR subfamilies revealed that selective forces shaped the GLR1&2 repertoires in the stems of eudicotyledons with distinct functional preferences. Moreover, GLR1&2 formed a species-specific highwoody-expanded subfamily, with preferential expression in the cambial-enriched and shoot apical meristem fractions of the highwood species. Together, these findings lay the foundation for evolutionary analysis of plant GLRs over the entire plant timescale and identified unique targets for manipulating the woody-growth behaviours of plant GLRs. Nature Publishing Group 2016-08-24 /pmc/articles/PMC4995503/ /pubmed/27554066 http://dx.doi.org/10.1038/srep32013 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Chen, Jianqing
Jing, Yinghui
Zhang, Xinyue
Li, Leiting
Wang, Peng
Zhang, Shaoling
Zhou, Hongsheng
Wu, Juyou
Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function
title Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function
title_full Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function
title_fullStr Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function
title_full_unstemmed Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function
title_short Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function
title_sort evolutionary and expression analysis provides evidence for the plant glutamate-like receptors family is involved in woody growth-related function
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4995503/
https://www.ncbi.nlm.nih.gov/pubmed/27554066
http://dx.doi.org/10.1038/srep32013
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