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Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation
Understanding how human cardiomyocytes mature is crucial to realizing stem cell-based heart regeneration, modeling adult heart diseases, and facilitating drug discovery. However, it is not feasible to analyze human samples for maturation due to inaccessibility to samples while cardiomyocytes mature...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4996857/ https://www.ncbi.nlm.nih.gov/pubmed/27431744 http://dx.doi.org/10.1016/j.gpb.2016.04.004 |
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author | Uosaki, Hideki Taguchi, Y-h |
author_facet | Uosaki, Hideki Taguchi, Y-h |
author_sort | Uosaki, Hideki |
collection | PubMed |
description | Understanding how human cardiomyocytes mature is crucial to realizing stem cell-based heart regeneration, modeling adult heart diseases, and facilitating drug discovery. However, it is not feasible to analyze human samples for maturation due to inaccessibility to samples while cardiomyocytes mature during fetal development and childhood, as well as difficulty in avoiding variations among individuals. Using model animals such as mice can be a useful strategy; nonetheless, it is not well-understood whether and to what degree gene expression profiles during maturation are shared between humans and mice. Therefore, we performed a comparative gene expression analysis of mice and human samples. First, we examined two distinct mice microarray platforms for shared gene expression profiles, aiming to increase reliability of the analysis. We identified a set of genes displaying progressive changes during maturation based on principal component analysis. Second, we demonstrated that the genes identified had a differential expression pattern between adult and earlier stages (e.g., fetus) common in mice and humans. Our findings provide a foundation for further genetic studies of cardiomyocyte maturation. |
format | Online Article Text |
id | pubmed-4996857 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-49968572016-09-02 Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation Uosaki, Hideki Taguchi, Y-h Genomics Proteomics Bioinformatics Original Research Understanding how human cardiomyocytes mature is crucial to realizing stem cell-based heart regeneration, modeling adult heart diseases, and facilitating drug discovery. However, it is not feasible to analyze human samples for maturation due to inaccessibility to samples while cardiomyocytes mature during fetal development and childhood, as well as difficulty in avoiding variations among individuals. Using model animals such as mice can be a useful strategy; nonetheless, it is not well-understood whether and to what degree gene expression profiles during maturation are shared between humans and mice. Therefore, we performed a comparative gene expression analysis of mice and human samples. First, we examined two distinct mice microarray platforms for shared gene expression profiles, aiming to increase reliability of the analysis. We identified a set of genes displaying progressive changes during maturation based on principal component analysis. Second, we demonstrated that the genes identified had a differential expression pattern between adult and earlier stages (e.g., fetus) common in mice and humans. Our findings provide a foundation for further genetic studies of cardiomyocyte maturation. Elsevier 2016-08 2016-07-16 /pmc/articles/PMC4996857/ /pubmed/27431744 http://dx.doi.org/10.1016/j.gpb.2016.04.004 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Original Research Uosaki, Hideki Taguchi, Y-h Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation |
title | Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation |
title_full | Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation |
title_fullStr | Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation |
title_full_unstemmed | Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation |
title_short | Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation |
title_sort | comparative gene expression analysis of mouse and human cardiac maturation |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4996857/ https://www.ncbi.nlm.nih.gov/pubmed/27431744 http://dx.doi.org/10.1016/j.gpb.2016.04.004 |
work_keys_str_mv | AT uosakihideki comparativegeneexpressionanalysisofmouseandhumancardiacmaturation AT taguchiyh comparativegeneexpressionanalysisofmouseandhumancardiacmaturation |