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Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation

Understanding how human cardiomyocytes mature is crucial to realizing stem cell-based heart regeneration, modeling adult heart diseases, and facilitating drug discovery. However, it is not feasible to analyze human samples for maturation due to inaccessibility to samples while cardiomyocytes mature...

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Detalles Bibliográficos
Autores principales: Uosaki, Hideki, Taguchi, Y-h
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4996857/
https://www.ncbi.nlm.nih.gov/pubmed/27431744
http://dx.doi.org/10.1016/j.gpb.2016.04.004
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author Uosaki, Hideki
Taguchi, Y-h
author_facet Uosaki, Hideki
Taguchi, Y-h
author_sort Uosaki, Hideki
collection PubMed
description Understanding how human cardiomyocytes mature is crucial to realizing stem cell-based heart regeneration, modeling adult heart diseases, and facilitating drug discovery. However, it is not feasible to analyze human samples for maturation due to inaccessibility to samples while cardiomyocytes mature during fetal development and childhood, as well as difficulty in avoiding variations among individuals. Using model animals such as mice can be a useful strategy; nonetheless, it is not well-understood whether and to what degree gene expression profiles during maturation are shared between humans and mice. Therefore, we performed a comparative gene expression analysis of mice and human samples. First, we examined two distinct mice microarray platforms for shared gene expression profiles, aiming to increase reliability of the analysis. We identified a set of genes displaying progressive changes during maturation based on principal component analysis. Second, we demonstrated that the genes identified had a differential expression pattern between adult and earlier stages (e.g., fetus) common in mice and humans. Our findings provide a foundation for further genetic studies of cardiomyocyte maturation.
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spelling pubmed-49968572016-09-02 Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation Uosaki, Hideki Taguchi, Y-h Genomics Proteomics Bioinformatics Original Research Understanding how human cardiomyocytes mature is crucial to realizing stem cell-based heart regeneration, modeling adult heart diseases, and facilitating drug discovery. However, it is not feasible to analyze human samples for maturation due to inaccessibility to samples while cardiomyocytes mature during fetal development and childhood, as well as difficulty in avoiding variations among individuals. Using model animals such as mice can be a useful strategy; nonetheless, it is not well-understood whether and to what degree gene expression profiles during maturation are shared between humans and mice. Therefore, we performed a comparative gene expression analysis of mice and human samples. First, we examined two distinct mice microarray platforms for shared gene expression profiles, aiming to increase reliability of the analysis. We identified a set of genes displaying progressive changes during maturation based on principal component analysis. Second, we demonstrated that the genes identified had a differential expression pattern between adult and earlier stages (e.g., fetus) common in mice and humans. Our findings provide a foundation for further genetic studies of cardiomyocyte maturation. Elsevier 2016-08 2016-07-16 /pmc/articles/PMC4996857/ /pubmed/27431744 http://dx.doi.org/10.1016/j.gpb.2016.04.004 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Original Research
Uosaki, Hideki
Taguchi, Y-h
Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation
title Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation
title_full Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation
title_fullStr Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation
title_full_unstemmed Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation
title_short Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation
title_sort comparative gene expression analysis of mouse and human cardiac maturation
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4996857/
https://www.ncbi.nlm.nih.gov/pubmed/27431744
http://dx.doi.org/10.1016/j.gpb.2016.04.004
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