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Fully automated, level set-based segmentation for knee MRIs using an adaptive force function and template: data from the osteoarthritis initiative
BACKGROUND: This study focuses on osteoarthritis (OA), which affects millions of adults and occurs in knee cartilage. Diagnosis of OA requires accurate segmentation of cartilage structures. Existing approaches to cartilage segmentation of knee imaging suffer from either lack of fully automatic algor...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4997678/ https://www.ncbi.nlm.nih.gov/pubmed/27558127 http://dx.doi.org/10.1186/s12938-016-0225-7 |
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author | Ahn, Chunsoo Bui, Toan Duc Lee, Yong-woo Shin, Jitae Park, Hyunjin |
author_facet | Ahn, Chunsoo Bui, Toan Duc Lee, Yong-woo Shin, Jitae Park, Hyunjin |
author_sort | Ahn, Chunsoo |
collection | PubMed |
description | BACKGROUND: This study focuses on osteoarthritis (OA), which affects millions of adults and occurs in knee cartilage. Diagnosis of OA requires accurate segmentation of cartilage structures. Existing approaches to cartilage segmentation of knee imaging suffer from either lack of fully automatic algorithm, sub-par segmentation accuracy, or failure to consider all three cartilage tissues. METHODS: We propose a novel segmentation algorithm for knee cartilages with level set-based segmentation method and novel template data. We used 20 normal subjects from osteoarthritis initiative database to construct new template data. We adopt spatial fuzzy C-mean clustering for automatic initialization of contours. Force function of our algorithm is modified to improve segmentation performance. RESULTS: The proposed algorithm resulted in dice similarity coefficients (DSCs) of 87.1, 84.8 and 81.7 % for the femoral, patellar, and tibial cartilage, respectively from 10 subjects. The DSC results showed improvements of 8.8, 4.3 and 3.5 % for the femoral, patellar, and tibial cartilage respectively compared to existing approaches. Our algorithm could be applied to all three cartilage structures unlike existing approaches that considered only two cartilage tissues. CONCLUSIONS: Our study proposes a novel fully automated segmentation algorithm adapted for three types of knee cartilage tissues. We leverage state-of-the-art level set approach with newly constructed knee template. The experimental results show that the proposed method improves the performance by an average of 5 % over existing methods. |
format | Online Article Text |
id | pubmed-4997678 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-49976782016-08-26 Fully automated, level set-based segmentation for knee MRIs using an adaptive force function and template: data from the osteoarthritis initiative Ahn, Chunsoo Bui, Toan Duc Lee, Yong-woo Shin, Jitae Park, Hyunjin Biomed Eng Online Research BACKGROUND: This study focuses on osteoarthritis (OA), which affects millions of adults and occurs in knee cartilage. Diagnosis of OA requires accurate segmentation of cartilage structures. Existing approaches to cartilage segmentation of knee imaging suffer from either lack of fully automatic algorithm, sub-par segmentation accuracy, or failure to consider all three cartilage tissues. METHODS: We propose a novel segmentation algorithm for knee cartilages with level set-based segmentation method and novel template data. We used 20 normal subjects from osteoarthritis initiative database to construct new template data. We adopt spatial fuzzy C-mean clustering for automatic initialization of contours. Force function of our algorithm is modified to improve segmentation performance. RESULTS: The proposed algorithm resulted in dice similarity coefficients (DSCs) of 87.1, 84.8 and 81.7 % for the femoral, patellar, and tibial cartilage, respectively from 10 subjects. The DSC results showed improvements of 8.8, 4.3 and 3.5 % for the femoral, patellar, and tibial cartilage respectively compared to existing approaches. Our algorithm could be applied to all three cartilage structures unlike existing approaches that considered only two cartilage tissues. CONCLUSIONS: Our study proposes a novel fully automated segmentation algorithm adapted for three types of knee cartilage tissues. We leverage state-of-the-art level set approach with newly constructed knee template. The experimental results show that the proposed method improves the performance by an average of 5 % over existing methods. BioMed Central 2016-08-24 /pmc/articles/PMC4997678/ /pubmed/27558127 http://dx.doi.org/10.1186/s12938-016-0225-7 Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Ahn, Chunsoo Bui, Toan Duc Lee, Yong-woo Shin, Jitae Park, Hyunjin Fully automated, level set-based segmentation for knee MRIs using an adaptive force function and template: data from the osteoarthritis initiative |
title | Fully automated, level set-based segmentation for knee MRIs using an adaptive force function and template: data from the osteoarthritis initiative |
title_full | Fully automated, level set-based segmentation for knee MRIs using an adaptive force function and template: data from the osteoarthritis initiative |
title_fullStr | Fully automated, level set-based segmentation for knee MRIs using an adaptive force function and template: data from the osteoarthritis initiative |
title_full_unstemmed | Fully automated, level set-based segmentation for knee MRIs using an adaptive force function and template: data from the osteoarthritis initiative |
title_short | Fully automated, level set-based segmentation for knee MRIs using an adaptive force function and template: data from the osteoarthritis initiative |
title_sort | fully automated, level set-based segmentation for knee mris using an adaptive force function and template: data from the osteoarthritis initiative |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4997678/ https://www.ncbi.nlm.nih.gov/pubmed/27558127 http://dx.doi.org/10.1186/s12938-016-0225-7 |
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